BAC Information

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BAC

Clone NameMSMg01-353A07
Chromosome3 (Build37)
Map Location 80,849,294 - 80,849,784
singlet/doubletsinglet
Overlap genePdgfc
Upstream geneEG626797, Gria2, Glrb, EG626841
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353A07.T7 (MSMg01no353_a07.b1)MSMg01-353A07.TJ (MSMg01no353_a07.g1)
ACCAG464001AG464002
length754768
length of high quality
(start - end)		491 (83 - 573)423 (85 - 507)
definitionCHROMAT_FILE: MSMg01no353_a07.b1 PHD_FILE: MSMg01no353_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:46 2005CHROMAT_FILE: MSMg01no353_a07.g1 PHD_FILE: MSMg01no353_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAGTTATTTATCTTCAAGTTATTAATATTTAAAA
TATTAATCCTCCTGAGATGTCTTTGCCAAATCAGTTCTCTGGTGAGGTTC
ATTCTGGGCCCTGTATATATAACAATGCTTACATCATTGTATGGCGGTTA
AGGACTAGAAATGACTAGATTGTGGTGGGTATGCTGTGTTGGTGTGTTGC
CACTTTTTGAGGCTATACTGTTTGCACTCCAGGAAATCCTTGCTCCTGGG
TGAATGCTATTTTAAACATTTCAGTGTTTGTAAGATGGAGGGAGTCCTCT
GGCTTAAGCTTGTCCAGCTGTCTACTGCACCTGCCCTTGTATCACAAAAT
AGATGAGACGCCATCAACAGCAGAAGTTAAACTTCCACGACACTTATGCT
GTTTCTGGCTGTTCTTTTTTACTGGCTATTTATAAGGACATCTGTCTTCT
AACAGTCGTATCTTTTATCTTTCCTCTCTACTGAGGGATAAATCACAGCT
TATATCCCATACTGCCACACACGCTCATAGCTAGGGTGATTACAAACGCC
AACGGGGTAGGCATTAAATTGGCCTAATTTCCCTTTCTATGGTAGAAGAC
GGTGCTTATAATCACCGGCTTGATTTGACATTTGTTTGCAATGTCATCCT
TAATATTTCCTTAGCTTATTACTTAAAATTTTCCCCTTTCTTTTGCCGTG
TGCG

TTTTTCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCA
CTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACC
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGAT
ACAGAATATGTGGTACATCCACCCAATGGAGTACTACTCAGCTATTAAAA
AGAATGATTTTATGAAAATCCTAACCAATTGGATGGAACCTGTAGGCACT
TTCCCTGAAAGTAGTATTCCTTTCCTAATAAACCCCCATCCCATGTTTTT
CCTTGATTAGGGTATATTCACCCCCTTCCCTCTGAACCCTTTTATACCTT
AAATACATCTTGTTTTCCCCTCGCCACCCCCCCGTCTCCGCGGCCATATT
CCATTCGGTCGTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_a07.b1 MSMg01no353_a07.b1 CHROMAT_FILE:
MSMg01no353_a07.b1 PHD_FILE: MSMg01no353_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:46 2005
         (491 letters)



>mm_chr3_80849094_80849984
          Length = 891

 Score =  903 bits (467), Expect = 0.0
 Identities = 485/491 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttattaatatttaaaatattaatcctcctgagatgtctttgccaaatcagttctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agttattaatatttaaaatattaatcctcctgagatgtctttgccaaatcaattctctgg 260

                                                                       
Query: 61  tgaggttcattctgggccctgtatatataacaatgcttacatcattgtatggcggttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tgaggttcattctgggccctgtatatataacaatgcttacatcattgtatgacggttaag 320

                                                                       
Query: 121 gactagaaatgactagattgtggtgggtatgctgtgttggtgtgttgccactttttgagg 180
           | ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ggctagaaatgactaaattgtggtgggtatgctgtgttggtgtgttgccactctttgagg 380

                                                                       
Query: 181 ctatactgtttgcactccaggaaatccttgctcctgggtgaatgctattttaaacatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatactgtttgcactccaggaaatccttgctcctgggtgaatgctattttaaacatttc 440

                                                                       
Query: 241 agtgtttgtaagatggagggagtcctctggcttaagcttgtccagctgtctactgcacct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 agtgtttgtaagatggagggagtcctctggcttaagcttgtccagctgtccactgcacct 500

                                                                       
Query: 301 gcccttgtatcacaaaatagatgagacgccatcaacagcagaagttaaacttccacgaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccttgtatcacaaaatagatgagacgccatcaacagcagaagttaaacttccacgaca 560

                                                                       
Query: 361 cttatgctgtttctggctgttcttttttactggctatttataaggacatctgtcttctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttatgctgtttctggctgttcttttttactggctatttataaggacatctgtcttctaa 620

                                                                       
Query: 421 cagtcgtatcttttatctttcctctctactgagggataaatcacagcttatatcccatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtcgtatcttttatctttcctctctactgagggataaatcacagcttatatcccatac 680

                      
Query: 481 tgccacacacg 491
           |||||||||||
Sbjct: 681 tgccacacacg 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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