NNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGCAAACAGGAAAGGGACTAGTTAGAGGCAGAAGAAA
GACAGCAGAGGCTAATGACAGCTAAATGGAGTCAAAGTACCTGGTAAACT
TAAATGAAAATGGCATTGTAAAACCTATCTTGTAGCACAGTAAATGCACA
ATAAAAATGATATAAAAGGAAATGGTCCAAGGTGTGGGATATTTTCATTA
TATTCAACTCGCCATGGTTTCCTGGTAAGCAGTTGTGTCAAAAATTGGCA
CACTTCAAATATGTGGATAAAGATACATACAAATCTATGGATAAAGTGTG
TGTGGTGTGTGAGGTAGTGTGTATGTGTTTCCACAAATCTCAGGATGGAT
GAGAGATGAGATGGGTCTCTTCTCTCCATATGACTTCCCCTTAGTTTGTG
GACTACTGTTGTCTCTAAGTTGCTGTTAAGCAATCATGTCTGTGATTGAA
GGCTTTAGGAAGGCACCACCAGCTGTTGCTTTCCATCTTTTATAGTAGAA
AGCAAAGAGAAAAATGTTTGCAACTCATATATCTATGTGAACATCATATA
AAGTAGGAGGCACCCTCATTTGTTCTCTGGGCCAGTTGATTCTCTGTGTC
AGCTGTATTCCAAGTGGTGATTTCCTGTTAGGCTTAAAAAGGAAAAAAAA
AACCTAATTTATTGGGCCCATTTATTTTTTTCGGGAATTTTGAACTATCT
TTAAAGGGTAATA

NNNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGATCCATTCTTATCTC
CTTGTAAAAAGCTCAAGTCTAAGTGGATCAAGGAACTCCACATAAAACCA
AAGACACTGAAACTTATAGAGGAGGAAGTGGGGGAAAGCCTCAAGAATAT
GGGCACAGGAGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTATAC
AATTGAGAATTGACAAATGGGACCTCATAAAATCGCAAAGCTTCTGTAAC
ACAAAAGACACTGTCAATAAGACAAAAAGACCACCAACAGATTGGAAAAG
GATCTTTACCAATGCTAAATCAGATAGGGGACTAATATACAATATATATA
TATATATTTATATTTATATATATAACTCAAGAAGATGGACTCCAGAAAAA
AAATCAAATAACCCCATTTAAAAATGGGGCCCAGAGCTAAACAAAGAATT
ATCAACTGAGGAATATCTAATAGCTGAGAAGTCCCTGAAAAAAATCTTCA
ACATTCTTAGTCATCAGGGAAATGCAAATCAAAACAACTCTGAGATTCCA
CCTCACACCAGTCAGAATGGNTAAGATCAAAAATTCTNGTGACAGCATAT
GTTGGCAACATGTGGAGAAAGAAGAACCCTCCCCCTTGTTGGGGGGGATT
GCCAGCTTTTGGAAAACACTCTGTAAATAACCGGGCGGGGCCTTACTTAT
TTTTTTGTTCAGGATATCTC

Query= MSMg01no353_l19.b1 MSMg01no353_l19.b1 CHROMAT_FILE:
MSMg01no353_l19.b1 PHD_FILE: MSMg01no353_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:41 2005
         (494 letters)



>mm_chr3_59866822_59867716
          Length = 895

 Score =  893 bits (462), Expect = 0.0
 Identities = 479/490 (97%), Gaps = 9/490 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgcaaacaggaaagggactagttagaggcagaagaaagacagcagaggctaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcattgcaaacaggaaagggactagttagaggcagaagaaagacagcagaggctaa 452

                                                                       
Query: 65  tgacagctaaatggagtcaaagtacctggtaaacttaaatgaaaatggcattgtaaaacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgacagctaaatggagtcaaagtacctggtaaacttaaatgaaaatggcattgtaaaacc 392

                                                                       
Query: 125 tatcttgtagcacagtaaatgcacaataaaaatgatataaaaggaaatggtccaaggtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tatcttgtagcacagtaaatgcacaataaaaatgatataaaaggaaatggtccaaggtgt 332

                                                                       
Query: 185 gggatattttcattatattcaactcgccatggtttcctggtaagcagttgtgtcaaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gggatattttcattatattcaactcgccatggtttcctggtaagcagttgtgtcaaaaat 272

                                                                       
Query: 245 tggcacacttcaaatatgtggataaagatacatacaaatctatggataaagtgtgtgtgg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 271 tggcacacttcaaatatgtggataaagatacatacaaatctatggataaagtgtgtg--- 215

                                                                       
Query: 305 tgtgtgaggtagtgtgtatgtgtttccacaaatctcaggatggatgagagatgagatggg 364
                 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ------aggtagtgtgtgtgtgtttccacaaatctcaggatggatgagagatgagatggg 161

                                                                       
Query: 365 tctcttctctccatatgacttccccttagtttgtggactactgttgtctctaagttgctg 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tcttttctctccatatgacttccccttagtttgtggactactgttgtctctaagttgctg 101

                                                                       
Query: 425 ttaagcaatcatgtctgtgattgaaggctttaggaaggcaccaccagctgttgctttcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ttaagcaatcatgtctgtgattgaaggctttaggaaggcaccaccagctgttgctttcca 41

                     
Query: 485 tcttttatag 494
           ||||||||||
Sbjct: 40  tcttttatag 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 895
Length adjustment: 10
Effective length of query: 484
Effective length of database: 885
Effective search space:   428340
Effective search space used:   428340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)