BAC Information

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BAC

Clone NameMSMg01-355D21
Chromosome3 (Build37)
Map Location 72,691,905 - 72,692,211
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355D21.T7 (MSMg01no355_d21.b1)MSMg01-355D21.TJ (MSMg01no355_d21.g1)
ACCAG465676AG465677
length751815
length of high quality
(start - end)
593 (47 - 639)311 (79 - 389)
definitionCHROMAT_FILE: MSMg01no355_d21.b1 PHD_FILE: MSMg01no355_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:38 2005CHROMAT_FILE: MSMg01no355_d21.g1 PHD_FILE: MSMg01no355_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGTACGATACCGAATGGCTGAGAAGCACCTAAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCAAGGATATGGAGAAAGAGGAACACTCCTCCATTGTGGGTG
GGATTGCAAGATTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCA
GAAAATTGGACATAGTACTACCAGAGGATCCCGCAATACCTCTCCTGGGC
ATATATCCAGATGTCCCAACCGGTAAGAAGGACACATGCACCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAATGGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATG
GATGGACCTGGAGTGTATCATCCTGAGTGAGGTAACCCAATCACAAGGGA
ACTCTCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGATACTTA
CAATACCCCAGATATAAGATACAATTTGCTAAACGCCTGAAACTTCCGAA
GAACGAAGACCAAAGTGTGGACCCTTTGCCCCCTCCTTAAAAAGGGAACC
A
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCATGGAGGTGAGAGTAG
GTGGGTGTGTGGGTCTACACCCTCATAGAAGCAAGAGGAGAGGGAATGAG
ATAGGGGACTCCTAAAGGGGGATAACATTTGAAATGTAAATAAATTAAAT
ATCAAAAAAAAAACTTCAAAAAAATGAGTCTCTACATCCAGATTATTTAA
GAGAACACTATTTTCTTCCCTGGTGAAGATGTGCAACCAAACAAAGAAAA
TGATTTTTATTAAACATTGGAATTATGTTATGTGTATCTCAAGCACCAAT
ATAATGCCATTTGGAAATGGATCGTTGGGTGTAGTAATTAAGTCATGGCG
CTAGAGTTCTTGTATTTATCATTAATACCCCTTATAGCTTTCAATGAAGA
AGATTTTTCCATTTTTCTTTCCCTGTCCCCGCCTATTCATTACTTTAATC
GGTTTTCCGCTCCCTTCGCTTTCTTTTTTGTCCCCTATCCGTCATTCCTT
TTATTATTTTCTATCTTTTCTTTTTTTTCCCCTTTTCCCTTTCTTTTCCT
CATCTTATTCACTCCCCCCTATTTATATCCTCTCGCCTCCCTCTACCCAT
TAGATATCTTCACCTATCTTCCTCGCTTTACTTTCATTCTCACCCCTTTT
TTCCTTTCCTTTCTCTAACTCCTCATCCTCCATTCTCTACCAACACCCTT
ACTTTTATTTTCTTTTACCTCTTCTGCTAATCTCCTCTATAAACATATCT
CTCTAATCCTAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_d21.g1 MSMg01no355_d21.g1 CHROMAT_FILE:
MSMg01no355_d21.g1 PHD_FILE: MSMg01no355_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:38 2005
         (311 letters)



>mm_chr3_72691701_72692411
          Length = 711

 Score =  493 bits (255), Expect = e-144
 Identities = 296/311 (95%), Gaps = 4/311 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccatggaggtgagagtaggtgggtgtgtgggtctacaccctcatagaagcaagagg 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaggccagggaggtgagagtaggtgggtgtgtgggtctacaccctcatagaagcaagagg 264

                                                                       
Query: 61  agagggaatgagataggggactcctaaagggggataacatttgaaatgtaaataaattaa 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaggggatgagataggggactcctaaagggggataacatttgaaatgtaaataaattaa 324

                                                                       
Query: 121 atatcaaaaaaaaaacttcaaaaaaatgagtctctacatccagattatttaagagaacac 180
           |   || |||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 a---cataaaaaaaacttc-aaaaaatgagtctctacatcctgattatttaagagaacac 380

                                                                       
Query: 181 tattttcttccctggtgaagatgtgcaaccaaacaaagaaaatgatttttattaaacatt 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattttcttccctcgtgaagatgtgcaaccaaacaaagaaaatgatttttattaaacatt 440

                                                                       
Query: 241 ggaattatgttatgtgtatctcaagcaccaatataatgccatttggaaatggatcgttgg 300
           ||| |||||  | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagttatgacaagtgtatctcaaccaccaatataatgccatttggaaatggatcgttgg 500

                      
Query: 301 gtgtagtaatt 311
           || ||||||||
Sbjct: 501 gtatagtaatt 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)