TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTCTACTAAAATCATCACTATACTGTTTCATATATTACCCAGTACTGA
AGCATGAGTTCTAAAGTTTATATTTTATGAACTATGAAAGGGAAATAACC
CATTTCTGAGGGGAAGTTGTAGGTGGGTATCCCTTATAACATTTAGTGTC
TCTAGTTTTCTGTTCCTAAGACTTTATCTTCCATAATCAAGTGAGTCTTA
ACATGATTAGGAAAAGAAACACAGTAGTCACAAGACAGTTTAATCACTAT
ACTGTTTATTCCTAGTGCATATCATATCTAAATCTATATACAAAGCATTC
TAGCCTGGAAATAAGGTGATGCTTCTAAATGTTCCTGGATCCCTCTCTAA
CACCTTCCCTGGTTTCATTCTTATCACTAAAAGTTACAAGTGAGAAACCC
AGACTATCGTAGAACAGTACATATCAGAACATATCAGTTGATATGACACC
ACATTATTCTATCATGTCTGCATTTCTTTTCCTTCTATTAAAAACATGCA
TGGGTAAGCCTGTAATTTCACAGGCTACATTCTCTGGAAATGATTGACAT
TACAACAGGGATGATTAATAAATCTCACCAAAACCAAGCACAATTCATGC
AACATTTGGAAGCCCAGAGAAACAGTATTGCATTTCTCAGATAAACTCTG
AAAAGCTATTATGCTAACTCCTCTTGGGAAGAAGCTCTCTCTTGGCTGGG
AAAGAATACCCCN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCATTAAACCCATCTAGCCCTGGGAAT
TTTGGGGAGAAGGTGACTTTTAAGGATTTTGATTTTTTTTTTTGTTAGGG
ATTATAAGACTATTTTGATAGTTTACCTGGTCTTGATTTAACTTTCGGAA
TTGGTATGTATCTAAAAAATCATGAATTTCACTTAAAAGTTCAATGTTGT
CAAGTGCAAGCATTTAAAGACTAAATGATTCCTTGAATTTCCTCAGTTTC
CATTGTTATGTCTCCTTCTTCTTTTCTGATGTTGTTAATTTGGCTCTGCC
TTTTAGTTAGTTTGGCTAAAGTTTTGTCTATCTTGCAGATAAGTAAACAA
ACAAAATCACATCAAAACAAATTAAAAACCCCAAAAACAACTCTTGGGGT
CTACTGATTGTTTCAATCCTTCTCTTTGTTCCTAATTAACTAATTTCCGC
AATGTTTGATGATTTCTTGGTTGCCCCCTTCTCCCCCTCTCATGTGAGCG
TGTGTCTGCTATAGTCTTTCTCATCTCTCTACCTCTTACTCCCTTTTTCT
TCCTCCTTCTTTTACTTTCTTCCCTCCCTTTCCCATCCCCTCGATCCCCT
ACCCCTCCTCCTCTTTTTTCTTTTTTTTCCTTCCCCTATTCCCGTTCCCT
CGTTTTTTTTTTCTTTCTTTCTCCCAATCTATCCTCCAGTTCTCTCTCTT
GTTCCTCTCTCCTTCTTCCACTACTCCCATTTCTCTACTCCTCTCCTTCT
CCCG

Query= MSMg01no355_f10.b1 MSMg01no355_f10.b1 CHROMAT_FILE:
MSMg01no355_f10.b1 PHD_FILE: MSMg01no355_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:46 2005
         (568 letters)



>mm_chr3_48472575_48473542
          Length = 968

 Score = 1091 bits (564), Expect = 0.0
 Identities = 564/564 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctactaaaatcatcactatactgtttcatatattacccagtactgaagcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaattctctctactaaaatcatcactatactgtttcatatattacccagtactgaagcat 709

                                                                       
Query: 65  gagttctaaagtttatattttatgaactatgaaagggaaataacccatttctgaggggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gagttctaaagtttatattttatgaactatgaaagggaaataacccatttctgaggggaa 649

                                                                       
Query: 125 gttgtaggtgggtatcccttataacatttagtgtctctagttttctgttcctaagacttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gttgtaggtgggtatcccttataacatttagtgtctctagttttctgttcctaagacttt 589

                                                                       
Query: 185 atcttccataatcaagtgagtcttaacatgattaggaaaagaaacacagtagtcacaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atcttccataatcaagtgagtcttaacatgattaggaaaagaaacacagtagtcacaaga 529

                                                                       
Query: 245 cagtttaatcactatactgtttattcctagtgcatatcatatctaaatctatatacaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cagtttaatcactatactgtttattcctagtgcatatcatatctaaatctatatacaaag 469

                                                                       
Query: 305 cattctagcctggaaataaggtgatgcttctaaatgttcctggatccctctctaacacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cattctagcctggaaataaggtgatgcttctaaatgttcctggatccctctctaacacct 409

                                                                       
Query: 365 tccctggtttcattcttatcactaaaagttacaagtgagaaacccagactatcgtagaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tccctggtttcattcttatcactaaaagttacaagtgagaaacccagactatcgtagaac 349

                                                                       
Query: 425 agtacatatcagaacatatcagttgatatgacaccacattattctatcatgtctgcattt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agtacatatcagaacatatcagttgatatgacaccacattattctatcatgtctgcattt 289

                                                                       
Query: 485 cttttccttctattaaaaacatgcatgggtaagcctgtaatttcacaggctacattctct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cttttccttctattaaaaacatgcatgggtaagcctgtaatttcacaggctacattctct 229

                                   
Query: 545 ggaaatgattgacattacaacagg 568
           ||||||||||||||||||||||||
Sbjct: 228 ggaaatgattgacattacaacagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)