NNGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAATGGGTTGTGAGTTACAGTTGGGGTACTGGGAACTGAG
TCCTAGTCCTCTGGAAGAGCAGCCAGTGCTTGCAAGTATGAACCCTCTTT
TATTTATTTTATTTTTTTCTGGGTGGGTGTTTTGCCAGTGTGTATGTCTG
TGCACGAGTTGTGTACCTGTTGAAGGCCAGAACGGGATGAAACTCAGTTG
CAGATGTAGGTTATGTGCGACCTACCACATGGGTGGTAGAAACTGAACTT
GAGTTCTCTGCCAGAGGAAAAAAGTATGGTTAATTTCTGAGCCATCTCTC
TAGATCCTCCTATACCACTACAACCCTCCTATATGTGTGCATGTACACAC
ACACACACACACACACATGCATGTACAGTTTTTTAAAAGCAGTAACTCTA
GGAGGTGGAGACATGGCTCAGTTCTTAATTGCAGTGGCTGCTTTTCCAGG
CGACTTGGTCTTAATTCCCTGCACCCACACAACAGGACATAACTGTCTGT
AACTCCAGTTCCAGGAGATCGGGTATATTCTTTTGGCCTCCTTCGGGACC
ATATATGCCTGTATTGCATACACTCCCCCCTGCTGCTCAATGGCTATATT
TACTATATTTTTACCTCCACCCCTTTTAACCATACTAATTTCGGTTTTTC
CTAGCGGGACCATTGTATTTCTACCCTGTTTTCTCGCCCTG

NNNTTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGTACAAGAAGGCC
AGAAGAAGATGCCAGGTCTCTTGGAAGTGGAGACACAGGTGGTGTGAGCA
GCCTGACCCGGATGCTGAGAATCAAACTCTGGTACTCTGCAAGAATATAA
AGTGTTTTCAACTATCTCTGGACATCTCTCCAGCCTCCTAAAATTCAATT
AAAAAAATAACTAACTAAAACAGAAGGACGCTGCCACTGCCAATTTAGCC
ACCATAAATGACCAACACCGGACGTGTGTACTGTGGTGAATCATGGCAAC
CCCTTGCCCACCCCCTTGCCACAGTCAAGGAACAGCGAGGGTCAGCTAAG
AAGAGGGAGCTTTAACTGAGAAAAGTCCTTTATCAGATTGGCCTGTGGGC
AGTCTGTGGGGTGTTTTCTTGACTGGTGATTGACGTGGAGGGCCCAGCCC
ACTGTGAGCAATGCCACCCCTGGGCAGACGGCCCTGGTGGTGTAAGGAAA
CAAGCCAGTAATCAAGATGCCTCCATAGGCTCTGTGTCAGNTTCCTGCCT
GACTTCTGTCTGTGGTAAACTGGGACTTTGATGGTTTTCTCCCCCAAGTG
CTTTTTGTTCCCCCGTTTATTCTCCCCATAAAAAACCAACCTTTGGGTGG
CCGGTAAAAATGCTTCACCTGCGTTAAAAACCTTTACGGTTTTTCTTAAG
TCTCTAG

Query= MSMg01no355_m19.g1 MSMg01no355_m19.g1 CHROMAT_FILE:
MSMg01no355_m19.g1 PHD_FILE: MSMg01no355_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:21 2005
         (435 letters)



>mm_chr3_50983929_50984763
          Length = 835

 Score =  654 bits (338), Expect = 0.0
 Identities = 429/496 (86%), Gaps = 61/496 (12%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgtacaagaaggccagaagaagatgccaggtctcttggaagtggagacacaggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 catgtgtacaagaaggccagaagaagatgccaggtctcttggaggtggagacacaggtgg 260

                                                                       
Query: 61  tgtgagcagcctgacccggatgctgagaatcaaactctggtactctgcaagaatataaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tgtgagcagcctgacccggatgctgagaatcaaactctggtactctggaagaatataaag 320

                                                                       
Query: 121 tgttttcaactatctctggacatctctccagcctcctaaaattcaattaaaaaaataact 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttttcaactatctctggccatctctccagcctcctaaaattcaattaaaaaaataact 380

                                                                       
Query: 181 aactaaaacagaaggacgctgccactgccaatttagccaccataaatgaccaacaccgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactaaaacagaaggacgctgccactgccaatttagccaccataaatgaccaacaccgga 440

                                                                       
Query: 241 cgtgtgtactgtggtgaatcatggcaaccccttgcccacccccttgccacagtca----- 295
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
Sbjct: 441 cgtgtgtactgtggtgaatcacggcaaccccttgcccacccccttgccacagtcagctgg 500

                                                                       
Query: 296 ---agg----------a----------------------------------acagcgagg 308
              |||          |                                  |||||||||
Sbjct: 501 ctaaggttgtgtgctgacttgatgtttggttggttgttttgtcagtttgggacagcgagg 560

                                                                       
Query: 309 gtcagctaagaag------aggg--agctttaactgagaaaagtcctttatcagattggc 360
           |||||||| ||||      ||||  |||||||||||||||||||||||| ||||||||||
Sbjct: 561 gtcagctaggaaggatggaagggggagctttaactgagaaaagtcctttctcagattggc 620

                                                                       
Query: 361 ctgtgggca-gtctgtggggtgttttcttgactggtgattgacgtggagggcccagccca 419
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgggcaagtctgtggggtgttttcttgactggtgattgacgtggagggcccagccca 680

                           
Query: 420 ctgtgagcaatgccac 435
           ||||||||||||||||
Sbjct: 681 ctgtgagcaatgccac 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)