Query= MSMg01no355_n17.b1 MSMg01no355_n17.b1 CHROMAT_FILE:
MSMg01no355_n17.b1 PHD_FILE: MSMg01no355_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:25 2005
(610 letters)
>mm_chr3_59811099_59812108
Length = 1010
Score = 1118 bits (578), Expect = 0.0
Identities = 599/606 (98%), Gaps = 2/606 (0%)
Strand = Plus / Plus
Query: 4 ggaattct-gggttcatcttagaatatacagagtggatatactgctgtaattgttccaga 62
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaaggtt-atcttagaatatacagagtggatatactgctgtaattgttccaga 262
Query: 63 atagttagaaactgacacttttgatgctgtaatatatatgctttctttgcatatacatgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atagttagaaactgacacttttgatgctgtaatatatatgctttctttgcatatacatgg 322
Query: 123 atctcctctcgctatcaactcttttctaaatgtatagtttatatgagaggaaatatatat 182
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atctcctctcgctatccactcttttctaaatgtatagtttatatgagaggaaatatatat 382
Query: 183 tcataagagtgcatacagagagagtagcagcttaaatttgagccccaggctgcattattt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcataagagtgcatacagagagagtagcagcttaaatttgagccccaggctgcattattt 442
Query: 243 atctgtgttctttatgtgcaaagtgggaaccttgcagaaagtgggtacattttgacagtt 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 443 atctgtgttctttatgtgcaaagtgggtaccttgcagaaagtgggtacattttgacagtt 502
Query: 303 ctaacagttggagcctgaaaagctaagctagcagaattaatagatgatcagaagttacag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctaacagttggagcctgaaaagctaagctagcagaattaatagatgatcagaagttacag 562
Query: 363 cagtccaaggtttaaaagatgcacagttccatgacaactaaaactaaagttctttataaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cagtccaaggtttaaaagatgcacagttccatgacaactaaaactaaagttctttataaa 622
Query: 423 tttctgagtatctgtgtctttcacctacagttctctttttcaaatgttctgattacttga 482
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 623 tttctgagtatctgtgtctttcacccacagttctctttttcaaatgttctgattacttga 682
Query: 483 tcgagggaatgaatacaggaaccagcccatgtcaattctcttgtgattatttcatatgta 542
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcaagggaatgaatacaggaaccagcccatgtcaattctcttgtgattatttcatatgta 742
Query: 543 tttaatgagaaatagccatgctttcatcaatatcacaatatcacctatcagaacatctca 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tttaatgagaaatagccatgctttcatcaatatcacaatatcacctatcagaacatctca 802
Query: 603 ctctaa 608
||||||
Sbjct: 803 ctctaa 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_n17.g1 MSMg01no355_n17.g1 CHROMAT_FILE:
MSMg01no355_n17.g1 PHD_FILE: MSMg01no355_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:25 2005
(492 letters)
>mm_chr3_59984577_59985466
Length = 890
Score = 909 bits (470), Expect = 0.0
Identities = 486/492 (98%), Gaps = 2/492 (0%)
Strand = Plus / Minus
Query: 1 tctacacctaacagtcagtttcacctgagaagcactaagcagtacatatggtcaagggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tctacacctaacagtcagtttcacctgagaagcactaagcagtacatatggtcaagggat 631
Query: 61 gtttgagctatgccatcattcctgagtgtacatatatatatatattcctggttaaattaa 120
||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||
Sbjct: 630 gtttgagctatgccatcattcctgagtgtac--atatatacatattccttgttatattaa 573
Query: 121 aaattaaggttcaggcaatcagtctttttatgactcattgcattaaaatcatcaagatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaattaaggttcaggcaatcagtctttttatgactcattgcattaaaatcatcaagatta 513
Query: 181 atttactattaaaataggattgctttaagaataaccagtaatactccattgtatttaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atttactattaaaataggattgctttaagaataaccagtaatactccattgtatttaaga 453
Query: 241 agccattattcatggggggaaatgaactacaagaagcccttgggtgcagtagtgtaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agccattattcatggggggaaatgaactacaagaagcccttgggtgcagtagtgtaaatt 393
Query: 301 ttcatatacatttccttggaaagcatttatgcttaaactcttacaaatcacagtttatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttcatatacatttccttggaaagcatttatgcttaaactcttacaaatcacagtttatgg 333
Query: 361 cagttgttttaggaggagagacaagtaaatcacaatctatatacatatatttttatggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cagttgttttaggaggagagacaagtaaatcacaatctatatacatatatttttatggcc 273
Query: 421 tcataaagctaagcattgctaaaatgtataaaggggttattatgtcaactaaatgacttt 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 272 tcataaagctaagcattgctaaaatgtataaagaggttattatgtcaactaaatgacttt 213
Query: 481 cttccctgggag 492
||||||||||||
Sbjct: 212 cttccctgggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 890
Length adjustment: 10
Effective length of query: 482
Effective length of database: 880
Effective search space: 424160
Effective search space used: 424160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
