BAC Information

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BAC

Clone NameMSMg01-355O07
Chromosome3 (Build37)
Map Location 17,174,647 - 17,174,998
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355O07.T7 (MSMg01no355_o07.b1)MSMg01-355O07.TJ (MSMg01no355_o07.g1)
ACCAG466170AG466171
length780759
length of high quality
(start - end)
274 (42 - 315)450 (69 - 518)
definitionCHROMAT_FILE: MSMg01no355_o07.b1 PHD_FILE: MSMg01no355_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:28 2005CHROMAT_FILE: MSMg01no355_o07.g1 PHD_FILE: MSMg01no355_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCATTTTTACTAGCTGAGTTTAAGTGTACCATATTTTCTGTATCCATT
CCTCTCTCTCTCTCTTTTTTTTTAGTTACGTATTTTCCTCAATTACATTT
CCAATGCTCTCCCCAAAGTCCCCCATATCCTCCCCCCACTTCCCTACCCA
CCCATTCCCATTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAA
GTTTGTGTGCCCAATGGTCCTCTCTTTCCAGTGATGACCGACTAGGCCAT
CTTTTGATGCATATGCTTCTAGAGTCAAGAGTTCTGGGGTACTGGTTAGT
TCAGAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGG
AACTTTCTCTAGCTCCTCCATTGGGAGTCCTGTGATCCATCCAATAGCTG
ACTGTGAGCATCCACTTCTGTGTTTGCCAGGTTCCGGCATATTTTTCCTA
GAGACTGCTATATTCCGGGAGCCCTTCCATGCCTTTCTTGAGGGATGTCT
GCACCCTTTCCAGCTTCTGTTTATTAAAAACACGTGTTTTTATGTTTCTC
GTTTGATCATGTGTCCTTATATACATGTTGTACTAACCTTCGGTCCATTC
GGGCTTGTCACCGCTGTTTCTGCGTCCCTCCCGCCATTAACCCGGCTCTT
AATCTTCGGATGTATTTCCCATTATCCCATACATCCAAATCGTTTTGTAA
TTAGCGCCCCTCATTCCTCCCCTCTTCTCN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGGGGTACTGGTTAGTTTACTCATCACACAC
TTCCTTTTAATCCAGGGCCACTGCTACCATGAAATCAGACAAACTAACTG
CAGATCTTCACTCCTCCTTTTCCTTTTTAGTTCCAAAGTTACCATTCTCA
TCCCCATCTCTGTAGTAGAACACCTGATGGTTTCTCTTTCCTTCCTTCAG
TGAGACTGGGTCTAAAAGATTATAAAGAGAGATGGAAATTTGCTGTCATC
CTACTAGGTTTCATGGCAGAAAGGGCCTCTGCAATAGCAAGGGGTGGCTG
TTGGAGTTGGGAGCTGTTTCTCTAGCCCACTTTTCTTGTGTATTCTCAAG
GAATGAAAATATATCTTATAATATGAGTAAAACAATCAATTACTAAAAAT
CTCCAAAACTGATAGAACTGTCAAAAACTGCTAGACTCTGTATGTGGTTC
AGATTTTTTCTTTTGAAATGTCATTTCTACATACTTAAAAAGATTATTAA
GAAATACAATTTGAGAAAAATATCTTTTATATGTTATCAATATTTTCAAA
ACTCACTAATATTTTCCATGACAATCTATCTCACAATAAATTGACCCTAT
CCCAATAACTATATTAACAGAGTAGTGTATTGGGAATAATGTATGCAACC
TGTGAGTACATACTATTTAATTAAAAATTTTCCTAATTACATCTAATTGA
TAATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_o07.g1 MSMg01no355_o07.g1 CHROMAT_FILE:
MSMg01no355_o07.g1 PHD_FILE: MSMg01no355_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:28 2005
         (450 letters)



>mm_chr3_17174149_17174998
          Length = 850

 Score =  619 bits (320), Expect = 0.0
 Identities = 344/352 (97%)
 Strand = Plus / Minus

                                                                       
Query: 99  cttttcctttttagttccaaagttaccattctcatccccatctctgtagtagaacacctg 158
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 850 cttttcctttttagttctaaagttaccattctcatccccatctctgtagtagaacacttg 791

                                                                       
Query: 159 atggtttctctttccttccttcagtgagactgggtctaaaagattataaagagagatgga 218
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 atagtttctctttccttccttcagtgagactgggtctaaaagattataaagagagatgga 731

                                                                       
Query: 219 aatttgctgtcatcctactaggtttcatggcagaaagggcctctgcaatagcaaggggtg 278
           |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 730 aatttgctatcatcctactaggtttcatggcagaaacggcctctgcaatagcaaggggtg 671

                                                                       
Query: 279 gctgttggagttgggagctgtttctctagcccacttttcttgtgtattctcaaggaatga 338
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 670 gctgttggagttgggagctgtttctctagcctgcttttcttgtgtattctcaaggaatga 611

                                                                       
Query: 339 aaatatatcttataatatgagtaaaacaatcaattactaaaaatctccaaaactgataga 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaatatatcttataatatgagtaaaacaatcaattactaaaaatctccaaaactgataga 551

                                                               
Query: 399 actgtcaaaaactgctagactctgtatgtggttcagattttttcttttgaaa 450
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 550 actgtcaaaaactgctagattctgtatgtggttcagattttttcttttgaaa 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)