XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCTGTTCTGAGCCCCATTTTTTAATGGGTTTATTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATATATATATTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCTTTTCCCAATCTGTTGGTAGTCTTTTTG
TCTTATGGACAGTATCTTTTCCCTTGCAGAAAAGGAAATCTTTTTCTTTG
CAGTTTCATGAGGTCCCATTTGTCAATTCTCAAACTTACAGTGCAAGGCA
TTGCTGTTCTATTCAAGAATTTTTCTCCTATGCCAATATCTTCTAGGCTT
TTCACCACATTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAG
TTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGAT
CGATTTGCATTCTTCTACAAAATAACAACCAGTTGTGCCAGCACCATTTG
TTGAAAATGTTGTCTTTCTTGCACTGGATGGTTTTAGCTCCCTTGTCAAA
GATCAAGTGACCATTTGTGTGTGGGTTCATTTCTAGGTCTTCCATTTTAT
TCCATTGGNCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATC
ACCATTGCTCTGTAATAAAGCTTTATGTCAGGGAAGGTTCCTTTATCCTT
GACAAAAGTTTTGCTACCCATAGTTTTTTGTTTTTCCTATGAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGGATCCCTGAATACATGTTTAGAGGGGTTAAAGACTGCAGTGAG
GGGAAGCCAAAGGAAATGTAAACTCCCAGAATTAAGCTCAGGTGAGTAAA
AGATTAAAAGTAAAATCAGATAAAATACAGATTCTCTCATTTTTTTCTCT
ACCCTCATTCTTACTGCAAAGCTTTGTCATCTTTTCCTTGATGCATCCTT
GATATTGCTTAAGGTAACGGGTATTATCTAATTATATTTCACAAAAGATC
TGGAAAGTATACATATGTGGGAAAAGTCAAATTGTGGTTGGTACACATGG
GAATTATGAGGCAGGTGCTAGCTCCCAGAGTCTCAGTTGTTGCTAATGTA
AGAGTCTTGGAGATGGGTGATAGTGAGAGCTAAGAAAGAGCACTAATGAG
GATTTTGACCACAGGCTTTATAGTTGCTTTGGGGGAAGAAACTGACAATA
CTAGCGAAAGGATTTCCAATATCAAGATGATAATTTTGGCAGTCTGGTGT
CGTAAATACTTACTCTAGGCCTTACTGATTATTTTTAAATTTTTATTATG
CTTTTGAGCTTTAACTATAAATACTGTTGGTACTTTGTAAACCTATCCTC
ACAAAGAAAATTTTTCTTTGGTCTCCTTTCAATCTCCGAATACCGTTGGT
CGGTGGCCCCTCTGCTTTTATTGCCTCTCTTTTCTCTTTTATTTT

Query= MSMg01no356_d10.g1 MSMg01no356_d10.g1 CHROMAT_FILE:
MSMg01no356_d10.g1 PHD_FILE: MSMg01no356_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:52 2005
         (464 letters)



>mm_chr3_4216742_4217606
          Length = 865

 Score =  870 bits (450), Expect = 0.0
 Identities = 459/462 (99%), Gaps = 1/462 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatccctgaatacatgtttagaggggttaaagactgcagtgaggggaagccaaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatccctgaatacatgtttagaggggttaaagactgcagtgaggggaagccaaaggaa 260

                                                                       
Query: 61  atgtaaactcccagaattaagctcaggtgagtaaaagattaaaagtaaaatcagataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtaaactcccagaattaagctcaggtgagtaaaagattaaaagtaaaatcagataaaa 320

                                                                       
Query: 121 tacagattctctcattttttt-ctctaccctcattcttactgcaaagctttgtcatcttt 179
           ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagattctcccattttttttctctaccctcattcttactgcaaagctttgtcatcttt 380

                                                                       
Query: 180 tccttgatgcatccttgatattgcttaaggtaacgggtattatctaattatatttcacaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttgatgcatccttgatattgcttaaggtaacgggtattatctaattatatttcacaa 440

                                                                       
Query: 240 aagatctggaaagtatacatatgtgggaaaagtcaaattgtggttggtacacatgggaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatctggaaagtatacatatgtgggaaaagtcaaattgtggttggtacacatgggaat 500

                                                                       
Query: 300 tatgaggcaggtgctagctcccagagtctcagttgttgctaatgtaagagtcttggagat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgaggcaggtgctagctcccagagtctcagttgttgctaatgtaagagtcttggagat 560

                                                                       
Query: 360 gggtgatagtgagagctaagaaagagcactaatgaggattttgaccacaggctttatagt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggtgatagtgagagctaagaaagagcactaatgaggattttgaccacaggctttatagt 620

                                                     
Query: 420 tgctttgggggaagaaactgacaatactagcgaaaggatttc 461
           |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 tgctttgggggaagaaactgacaatactagggaaaggatttc 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)