Query= MSMg01no360_b04.b1 MSMg01no360_b04.b1 CHROMAT_FILE:
MSMg01no360_b04.b1 PHD_FILE: MSMg01no360_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:43 2005
(621 letters)
>mm_chr3_13311280_13312301
Length = 1022
Score = 1073 bits (555), Expect = 0.0
Identities = 603/619 (97%), Gaps = 3/619 (0%)
Strand = Plus / Plus
Query: 5 gaattctcggttctttgattctttcctcagcttcatgtataattttcagcacatagatca 64
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattctcagttctttgattctttcctcagcttcatgtataattttcagcacataggtca 264
Query: 65 cacatcctgaaaatctctgtctttgaaatattccaacactatatttaaatcttatatcct 124
|||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct: 265 cacatcctgaaaatctctgtttttgaaatattacaacactgtatttaaatcttatatcct 324
Query: 125 aattcatgccccagaaaagcccttctgctaagacaaagattcctttctaaatccccttcc 184
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 aattcatgtcccagaaaagcccttctgctaagaaaaagattcctttctaaatccccttcc 384
Query: 185 aggctatattcctaacttgatgaatcaaagtaagagcagaaatttcttagttcctcttaa 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 aggctatattcctaacttgatgaatcaaagtaagagcagaaatctcttagttcctcttaa 444
Query: 245 tcatccatgtttttgcattgcggtgttgggaatccagcctaggaaggtccatgtaccatg 304
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatccatgtttttgcattgtggtgttgggaatccagcctaggaaggtccatgtaccatg 504
Query: 305 catgttgcaagctagtactcagcactcaatccccccccc-aacctttctttcctatattc 363
||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 505 catgttgcaagctagtactcagcactcaatccccccccccaaactttctttcccatattc 564
Query: 364 ttacctatcttagttactattctattgctgttaagagatatcacagctgaggcaacatat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttacctatcttagttactattctattgctgttaagagatatcacagctgaggcaacatat 624
Query: 424 aaatgacatcatttaattggagactttcttatagttccagagtcct-aatcatttaccat 482
||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct: 625 aaatgacatcatttaattggagactttattatagttccagagtc-tgaatcatttaccat 683
Query: 483 gacaaaagcagcaagctggaaggcatgttgctgaagtaatagctgaagctcacattagag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gacaaaagcagcaagctggaaggcatgttgctgaagtaatagctgaagctcacattagag 743
Query: 543 gcagagaaagtaagagagaaactgttcctggcatgagctttttaaacctcaaaacaaccc 602
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcaaagaaagtaagagagaaactgttcctggcatgagctttttaaacctcaaaacaaccc 803
Query: 603 tcattgatacacctcttcc 621
|||||||||||||||||||
Sbjct: 804 tcattgatacacctcttcc 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_b04.g1 MSMg01no360_b04.g1 CHROMAT_FILE:
MSMg01no360_b04.g1 PHD_FILE: MSMg01no360_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:44 2005
(496 letters)
>mm_chr3_13467415_13468316
Length = 902
Score = 897 bits (464), Expect = 0.0
Identities = 490/502 (97%), Gaps = 6/502 (1%)
Strand = Plus / Minus
Query: 1 tacgacaaagtgacttatgcactagaagcgtgggcatacaagtggcttcttagtgcatac 60
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 702 tacgacaaagtgacttatgcactagaagcgtgggcacacaagtggcttcttcgtgcatac 643
Query: 61 acttgagagggagcagaacaagtacaacaccatgttattactcattgattactgacctgt 120
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 642 acttgagagggaacagaacaagtacaacaccatgttattacttattgattactgacctgt 583
Query: 121 cagtcacccttttaatgtggatataagatgtgtcactttatatatttagacactgggacg 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cagtcacccttttagtgtggatataagatgtgtcactttatatatttagacactgggacg 523
Query: 181 tcttccaagataattccttagattttatccaatgaaaatgac------aatgaaaatgtg 234
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 522 tcttccaagataattccttagattttatccaatgaaaatgacaatgaaaatgaaaatgtg 463
Query: 235 gctgtctgggagctaaacataggcatatgaaaaagttctaaatgttaagaatattaagct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gctgtctgggagctaaacataggcatatgaaaaagttctaaatgttaagaatattaagct 403
Query: 295 aatttaaaaatgctttaatacaaattaagataagcaaatgagaggccttcagggatcaaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aatttaaaaatgctttaatacaaattaagataagcaaatgagaggccttcagggatcaaa 343
Query: 355 gacataggggaatttatatgaggcgaaacaaaatgtgattgagaaagctcattaagaaaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gacataggggaatttatatgaggcgaaacaaaatgtgattgagaaagctcattaagaaaa 283
Query: 415 ccacccaccactcaatattttattttattttttctgaggctttatttaagtgatattaag 474
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccacccatcactcaatattttattttattttttctgaggctttatttaagtgatattaag 223
Query: 475 aaatgctatgggctggggttgt 496
||||||||||||||||||||||
Sbjct: 222 aaatgctatgggctggggttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 902
Length adjustment: 10
Effective length of query: 486
Effective length of database: 892
Effective search space: 433512
Effective search space used: 433512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
