Query= MSMg01no360_c10.b1 MSMg01no360_c10.b1 CHROMAT_FILE:
MSMg01no360_c10.b1 PHD_FILE: MSMg01no360_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:49 2005
(490 letters)
>mm_chr3_86690945_86691836
Length = 892
Score = 812 bits (420), Expect = 0.0
Identities = 473/492 (96%), Gaps = 4/492 (0%)
Strand = Plus / Plus
Query: 1 tcatttcctatcaacactgtatcacaatgttatctaaacggactcctttaaacaaggact 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 203 tcatttcctatcaacactgtatcacaatgttatctaaacggactcctgtaaacaaggact 262
Query: 61 agaaggcaggatggagtatgcagtgaggccagcaaagatggctgagtgagtaaagccttg 120
|||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 263 agaaggcagggtggagtatgcaatgaggccagcaaagatggctgagtgggtaaagccttg 322
Query: 121 ctgccatgtctaaggacctgagttcaatctacagtccaggaagagagaactgtctcctgc 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 323 ctgccatgtctaaggacctgagttcaatctacagttcaggaagagagaactgtctcctgc 382
Query: 181 aagccatcctctgacttccacacacacacacacatgcatccacacaaaaatacacaaata 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagccatcctctgacttc--cacacacacacacatgcatccacacaaaaatacacaaata 440
Query: 241 aatatatttttaagataagaataaataaaagcagagccctccaacccaagggcccttctg 300
|||||| | |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aatataataagaagagaagaataaataaaagcagagccctccaacccaagtgcccttctg 500
Query: 301 ctatctgaacctgctctcttcatctccccattacattacaatccttgtttacatgagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatctgaacctgctctcttcatctccccattacattacaatccttgtttacatgagatg 560
Query: 361 actcatgaactgcatcaaatgtgacttattattacttagacaccttaacacattgtaatt 420
|||||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 561 actcatgaactgtagcaaatgtgacttattattacttagactctttaacacattgtaatt 620
Query: 421 agatgccacttaatgactgttattagtacagttatcaaccctaccacaccttgctccct- 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatgccacttaatgactgttattagtacagttatcaaccctaccacaccttgctccctc 680
Query: 480 -gacttagcaaa 490
|||||||||||
Sbjct: 681 tgacttagcaaa 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 892
Length adjustment: 10
Effective length of query: 480
Effective length of database: 882
Effective search space: 423360
Effective search space used: 423360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_c10.g1 MSMg01no360_c10.g1 CHROMAT_FILE:
MSMg01no360_c10.g1 PHD_FILE: MSMg01no360_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:49 2005
(423 letters)
>mm_chr3_86940156_86940978
Length = 823
Score = 772 bits (399), Expect = 0.0
Identities = 417/423 (98%)
Strand = Plus / Minus
Query: 1 aggagagaataaagtgagtttcttctctgttgtctgtaccaggcactgtctctacttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aggagagaataaagtgagtttcttctctgttgtctgtaccaggcactgtctctacttact 466
Query: 61 gttgcctggtttactttaattcacacagaggtctgttaaataggaattaatgatcccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gttgcctggtttactttaattcacacagaggtctgttaaataggaattaatgatcccatt 406
Query: 121 ttctattttctgtataagcagtaagatctagagaaatgagggaatatctgaaacccaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttctattttctgtataagcagtaagatctagagaaatgagggaatatctgaaacccaaac 346
Query: 181 tcatttctctcgatttctggctccttttaccatgatctcttaggcttccttgtaatcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcatttctctcgatttctggctccttttaccatgatctcttaggcttccttgtaatcttc 286
Query: 241 ttttttatggagccggaccgtgttacggcgagacagaaaccatgtggctaactccaccac 300
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atgatgaaggagccggaccgtgttacggcgagacagaaaccatgtggctaactccaccac 226
Query: 301 ctggatgtttgggtggcttgttttatttgtttattttcgagacaggatttacctctgtag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ctggatgtttgggtggcttgttttatttgtttattttcgagacaggatttacctctgtag 166
Query: 361 ctcagtctatcttagacctcactgtgagtcccaggctgccttgaatttgaggctatcctc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 165 ctcagtctatcttagacctcactgtgagtcccaggctgccttgaatttgaggttatcctc 106
Query: 421 ctg 423
|||
Sbjct: 105 ctg 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
