BAC Information

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BAC

Clone NameMSMg01-360G23
Chromosome3 (Build37)
Map Location 34,618,603 - 34,618,991
singlet/doubletsinglet
Overlap genenone
Upstream geneTtc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G23.T7 (MSMg01no360_g23.b1)MSMg01-360G23.TJ (MSMg01no360_g23.g1)
ACCAG469611AG469612
length777776
length of high quality
(start - end)		249 (71 - 319)401 (70 - 470)
definitionCHROMAT_FILE: MSMg01no360_g23.b1 PHD_FILE: MSMg01no360_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:11 2005CHROMAT_FILE: MSMg01no360_g23.g1 PHD_FILE: MSMg01no360_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAATCCGCGGAATTC
ATTGATATTTACGCAAAAGAATTGTTGCTTCCTGGTTTTTTTGTTTTGTT
TTGTTTTGTTTTGTTTTTTTGCTGTTAATGTTGGCATTCTGTTCTTGTGG
CTGTCTTCTTTTAGGTTAGTTGAAGGATTACTTTCTTGTTTTTTCTAGGA
CATGGTTTCTGTCCTTGTATTGGTTTTTTTTTTTTTCTGTTATTATCCTT
TGAAGGGCTGGATTCGTGGAAAGATATTGTGTAAATTTGGTTTTGTCATG
AAATATCTTGGTGTCTCCATCTATGTTAATTGAGAGTTTCGCTGGGTATA
GTAGCCTGGGCTGGCATTTGTGTTCTCTTAGGGTCTGTATGACATCTTCC
CAAGATCTTCTAGCTTTCATAGTCTCTGGTGAAAAATCTGGTATAATTCT
GATAGGCTTGCCTTTATATGTTACTTGTCCTTTTTCCCTTACTGCTTTTA
ATATTCTATCTTTATTTAGCGCATTTGTTGTTCTGATTATTGTGTCGGGA
GGAATTTCTTTTCTGGCCAGTCCATTTGGAGTTCTGTAAGCCTCTTGGAA
GTTCATGGGATCCCCTTTTTTTAGGTTTGGGAAGATTCTTTTTATTAATC
TCGTATTAAAATTTGCTGGGCCCTTTGTATTTAAAACTTATCTTCTCTTC
TACCCCCATTATCCCGAAATGTATTTTTTTTCCCCTGTGGGCCCGGTATT
TTTTGTTGTGCTTTCCTCCACCCATTN

TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAATCTGTCAGTCACTCTGATAGACGCACAG
CTCCAACCATATTATTTTTTGTTTCAACGAACGAACATATTTTAAATATC
ATTTTTAAAGGCAAAGGCAACTCACTCGATGTCTTGATGAGTTCCAAAAG
TTCTCCTCCGCCCCTCTCCCAGAAGAGAGAGTTTTATAGTTGCTGTTGTT
CTGCTTGCTTTGTTTGAGACAGGGTCTCATAGCCTAGGATAGCCTCCACT
TATTTATGATGAAGACAGACAAATTCCTTGTCTTGTCCCTCCAACCTGGC
GGCTGTTGTTGCTGCACTCTTCGTCCTCCTCCTCTTCCCCATTCCCTTCC
CTTTCCCTCCTCCCCGCCTTCTTTGTTTTTAGTTTTGTCTGTTTATTTGA
GACAACATCTATCTGTGTAAGACAGACTAGCCTTGAACTTATGGAAATCG
TCCTGTCTCAGCCTCCCAAGTGCTTACTGCCAATCACCGAGACCATCTCA
GTTCTCTCGGCATCCAGGGACTGCCCNGATTTCTTGACGAAAAAAGTTCT
GATTTAAAACGTCTCCTTCAGTAAAAACACCCCGGGATGAATCCAACACG
GGAGTTGTGCCCCCCCGGGCTTCTCTGAGAAAAGGTGGGATCAAACCCGG
ACTCCGAATTTTTATTTTTAATGGCCGCAGGGTTTTATTTCCCCCCCTTA
ATGTGTTGTAAGAAAAATAAATCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g23.g1 MSMg01no360_g23.g1 CHROMAT_FILE:
MSMg01no360_g23.g1 PHD_FILE: MSMg01no360_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:11 2005
         (401 letters)



>mm_chr3_34618603_34619403
          Length = 801

 Score =  729 bits (377), Expect = 0.0
 Identities = 386/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatctgtcagtcactctgatagacgcacagctccaaccatattattttttgtttcaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caatctgtcagtcactctgatagacgcacagctccaaccatattattttttgtttcaacg 330

                                                                       
Query: 61  aacgaacatattttaaatatcatttttaaaggcaaaggcaactcactcgatgtcttgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aacgaacatattttaaatatcatttttaaaggcaaaggcaactcactcgatgtcttgatg 270

                                                                       
Query: 121 agttccaaaagttctcctccgcccctctcccagaagagagagttttatagttgctgttgt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agttccaaaagttctcccccgcccctctcccagaagagagagttttatagttgctgttgt 210

                                                                       
Query: 181 tctgcttgctttgtttgagacagggtctcatagcctaggatagcctccacttatttatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctgcttgctttgtttgagacagggtctcatagcctaggatagcctccacttatttatga 150

                                                                       
Query: 241 tgaagacagacaaattccttgtcttgtccctccaacctggcggctgttgttgctgcactc 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 149 tgaagacagacaaattccttgtcttgtccctccaacctggcagctgttgctgctgcactc 90

                                                                       
Query: 301 ttcgtcctcctcctcttccccattcccttccctttccctcctccccgccttctttgtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ttcgtcctcctcctcttccccattcccttccctttccctcctccccgccttctttgtttt 30

                                        
Query: 361 tagttttgtctgtttatttgagacaacat 389
           |||||||||||||||||||||||||||||
Sbjct: 29  tagttttgtctgtttatttgagacaacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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