Query= MSMg01no360_i06.b1 MSMg01no360_i06.b1 CHROMAT_FILE:
MSMg01no360_i06.b1 PHD_FILE: MSMg01no360_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:17 2005
(514 letters)
>mm_chr3_99345023_99345936
Length = 914
Score = 934 bits (483), Expect = 0.0
Identities = 505/513 (98%), Gaps = 2/513 (0%)
Strand = Plus / Plus
Query: 4 ggaattccatgttcttcccttttttttt--aaataggtatttcttgtttctacatattat 61
|||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 202 ggaattccatgttcttgtctttttttttttaaataggtatttcttgtttctgcatattat 261
Query: 62 ttgaatatctcttctgattattttggttaatttaaattctattgttttgagagttttata 121
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 262 ttgaatatctcttctgattattttggttaatttaaattctactgttttgagagttttata 321
Query: 122 cattgtaagaccccatgattctattcccgagtttgggatcatgccttattcagtgtggtg 181
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 322 cattgtaagaccccatgattctattcctgagtttgggatcatgccttattcagtgtggtg 381
Query: 182 ttcttagtatttaccacagtgcctaggatatggtaaggacttgagtgataggtattgtat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcttagtatttaccacagtgcctaggatatggtaaggacttgagtgataggtattgtat 441
Query: 242 aaaagcgtgatttcctcatacagtcatgtcattttatatcatgtaggagcttacatttct 301
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaaagcgtgatttcctcatactgtcatgtcattttatatcatgtaggagcttacatttct 501
Query: 302 aataaaatagtattgctgtcttaaaaaaaaccaaaaccaaacaaacaaaaacccaaacaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aataaaatagtattgctgtcttaaaaaaaaccaaaaccaaacaaacaaaaacccaaacaa 561
Query: 362 acaaaaaagaccccatgattcaccaaagagtgacacccctgaaatcaaatagtgtgtaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acaaaaaagaccccatgattcaccaaagagtgacacccctgaaatcaaatagtgtgtaaa 621
Query: 422 tgcagagtgttttattctgcagaagtccagcatactggggtttttcattaccaagataga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgcagagtgttttattctgcagaagtccagcatactggggtttttcattaccaagataga 681
Query: 482 gagacaaccaagtgagcttgaaggcctgactta 514
|||||||||||||||||||||||||||||||||
Sbjct: 682 gagacaaccaagtgagcttgaaggcctgactta 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_i06.g1 MSMg01no360_i06.g1 CHROMAT_FILE:
MSMg01no360_i06.g1 PHD_FILE: MSMg01no360_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:17 2005
(492 letters)
>mm_chr3_99479762_99480653
Length = 892
Score = 922 bits (477), Expect = 0.0
Identities = 488/492 (99%)
Strand = Plus / Minus
Query: 1 actgttaagtgagtactgttcagaatacacagatgcaatctgcacaaattaatttgcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 635 actgttaagtgagtactgttcagaatacacagatgcaatctgcacaaattagtttgcagt 576
Query: 61 tgaaagtccaaatggttttttttcttttttaaataacagtggttctaaactaggagcaac 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgaaagtccaaatgtttttttttcttttttaaataacagtggttctaaactaggagcaac 516
Query: 121 atgtgttgggtttgtccatgttgtttctactaccatctcccatgtgtttctgtgcaggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atgtgttgggtttgtccatgttgtttctactaccatctcccatgtgtttctgtgcaggct 456
Query: 181 tttgtgttaccgtgaagttttgattattttccaccgtatattttgcctcacatagccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tttgtgttaccgtgaagttttgattattttccaccgtatattttgcctcacatagccatg 396
Query: 241 ctgctgaggaaatactgtagacaaaagcaaaactactattccttttcttctaaccttaaa 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 395 ctgctgaggaaatactgtagacaaaaacaaaactactattccttttcttctaaccttaaa 336
Query: 301 atcattaatatttaatttatcagtgggagcatcaggcaggggtgtaaagtctcatcaagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atcattaatatttaatttatcagtgggagcatcaggcaggggtgtaaagtctcatcaagg 276
Query: 361 acgatgttctgccatcttgaaaggctgccaaagagaggaagacaatcctccatggcctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 acgatgttctgccatcttgaaaggctgccaaagagaggaagacaatcctccatggcctct 216
Query: 421 ttgattggtcccatgtatattttattagnatatattctaatatatatcatatataaattt 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 215 ttgattggtcccatgtatattttattagtatatattctaatatatatcatatataaattt 156
Query: 481 ttaatttactct 492
||||||||||||
Sbjct: 155 ttaatttactct 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
