BAC Information

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BAC

Clone NameMSMg01-360J08
Chromosome3 (Build37)
Map Location 66,887,229 - 66,887,717
singlet/doubletsinglet
Overlap geneRsrc1
Upstream geneVeph1, Tpi-rs2, Ptx3, LOC625115, Shox2
Downstream geneMlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360J08.T7 (MSMg01no360_j08.b1)MSMg01-360J08.TJ (MSMg01no360_j08.g1)
ACCAG469723AG469724
length7541,149
length of high quality
(start - end)		493 (49 - 541)---
definitionCHROMAT_FILE: MSMg01no360_j08.b1 PHD_FILE: MSMg01no360_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:22 2005CHROMAT_FILE: MSMg01no360_j08.g1 PHD_FILE: MSMg01no360_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTCTGTTTTCAATTGATTTGCTCATTTTGTTTGCTACTTTG
CTTGTGTTCAGATTTAAAGAATGTCATAGAAACTGGCAGGCTGTCATTTG
TAGAGATCCTTATAATGTGATGCGAATAATTAATATGAGATTTTAAAGAA
GATAACCTTAAAAATATTACATTTATAAAATGATAAAGCATGTCATACAT
GTTTTGCTTACATATAAATACTTAGAATAAAATTAGAAATTATATTAGTG
AAGGGAAATGGCAGTAGTAGGTTCTTTTCTAGTGTCTGTGATCTTTCAGA
CACAGGTATTTGACTAGGTTTACAGTACTGTGCATGCATTTCTTCTAATT
GAGCAGGACTTGATTCCAAGTAGACACTTGTTGGTCACCTCCAAGATAAA
AGTACAATTATTATACCACTGGGAATATTTTGCCATTTATATCTCAAATA
TGAGATTTTAAGACAGTAACCTTTAAAAAATTATATTTATAACATTTGGT
TTCTAAGAAAAAAACTGTTACTGCGAGACAGTACTCAGAAGTTTATAATA
TCCCTTGGGTCCCATGCGTAAAACTTGGTGTGTTGATGCTGAACATGTGT
TACCCCCGCAGCATCCCCCCTGGGGTTTCGCCTATTAAGGGGTCCTATGG
CCCCGCCCAACCAATTTTTTGTTGGGAAATATTGGGGAATTTTGGCGCCC
ACTG

TTCCTCCTTTTTAGGTATTATACTGTCGATTCGAACACATCTCATGTACT
AACAAAAATAAGAGACGTTCACAAAAACATAAAGACTACTACAGCACAGA
CTCCATTCCACGAACACACCCAAACCTCCTTACCACGATTCGTCCACGAT
TCCCTCTCATTCGTCTCCCGTACGCGTGGACGGACGATGAGCGGCGAGCA
CGGCCATAAACCGACATCTCTGCGTGTCACTAGTTTTTTTCCAACTAAAC
CGACCAGCCTCCACAGATACTTTATTCTCCAAAAGTTAGTCTCACACCTA
TAGACCACCATCCACGCATCCTGCTTACTGTTAGATCAATCGTCTTCTGT
GTACCTTCCGCACGAGGCCGACACTCGGCACACACCGAGTAAAGCAGAAG
GTAAAATACAAGCGAGAAAGCATAATACATACATATACAAAACAATAAGG
CTCGCCCACCCGAGCGATACGAATACATACATAGTATACATAGCGCGGGA
GATACGGTCGAGGTAAAATGCAGTTATAAGAGGCAACAGATAAGAGTTAC
CGAAAGCACAACGGAAAAAAAACGGATAAACCTCTCGACACCGATCCGGT
AGCCCGCATCGACTACAAGACATGCTACCGGTCTACCGCCTTCGATGCAA
ATAGGCCAGATATATTCGTACGCGGATGTGAGTAGTTCCAATAAAAAAAG
AGAGTAAAACAACGAACACAGGAGATAGAGATAGGAAACGCGTGCAATCA
TACAGAATTTTAAAACACACAATCAATATCTGAGAAACAATAGAGATTAT
ATAATGAGCGAGTATAGAATGGAGATGATGAGCAACCGTACATTAGTAAC
GAGTATACGGNGCCGTTTACGCACCGACTCGGCTATTTGGCCTTACATTA
TTTTCGCGCTCTTATTTCGGCCCTCGCATTTTATGCTCGATTATATTCGC
TCTCGTGCTATTTAGCGGGCGCGAGAATCTAGAACACGGATCATCACGTC
ATACGCGACAACCGCGCCCCTGTTGCATACGCTGTCTCATATACGCGTTT
CGCGCTTTCGCCCGCGTATCCTTTGCGCCGAATACCGCATAATATGCGCT
AAGCTATCTTAACGCCTGCGCGATATTACACTCTGCACATTATTCACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_j08.b1 MSMg01no360_j08.b1 CHROMAT_FILE:
MSMg01no360_j08.b1 PHD_FILE: MSMg01no360_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:22 2005
         (493 letters)



>mm_chr3_66887025_66887917
          Length = 893

 Score =  915 bits (473), Expect = 0.0
 Identities = 485/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctgttttcaattgatttgctcattttgtttgctactttgcttgtgttcaga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctgttttaaattgatttgctcattttgtttgctactttgcttgtgttcaga 264

                                                                       
Query: 65  tttaaagaatgtcatagaaactggcaggctgtcatttgtagagatccttataatgtgatg 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 tttaaagaatgtcatagaaactggcagggtgtcatttgtagagatccttataatgtgatg 324

                                                                       
Query: 125 cgaataattaatatgagattttaaagaagataaccttaaaaatattacatttataaaatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgaataattaatatgagattttaaagaagataaccttaaaaatattacatttataaaatg 384

                                                                       
Query: 185 ataaagcatgtcatacatgttttgcttacatataaatacttagaataaaattagaaatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaagcatgtcatacatgttttgcttacatataaatacttagaataaaattagaaatta 444

                                                                       
Query: 245 tattagtgaagggaaatggcagtagtaggttcttttctagtgtctgtgatctttcagaca 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 445 tattagtgaagggaaatggcagtagtaggttcttttctagtgactgtgatctttcagaca 504

                                                                       
Query: 305 caggtatttgactaggtttacagtactgtgcatgcatttcttctaattgagcaggacttg 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 caggtatttgactaggtttacagtactgtgcatgtatttcttctaattgagcaggacttg 564

                                                                       
Query: 365 attccaagtagacacttgttggtcacctccaagataaaagtacaattattataccactgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attccaagtagacacttgttggtcacctccaagataaaagtacaattattataccactgg 624

                                                                       
Query: 425 gaatattttgccatttatatctcaaatatgagattttaagacagtaacctttaaaaaatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaatattttgccatttatatctcaaatatgagattttaagacagtaacctttaaaaaatt 684

                    
Query: 485 atatttata 493
           |||||||||
Sbjct: 685 atatttata 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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