BAC Information

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BAC

Clone NameMSMg01-360L23
Chromosome3 (Build37)
Map Location 42,164,141 - 42,164,589
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360L23.T7 (MSMg01no360_l23.b1)MSMg01-360L23.TJ (MSMg01no360_l23.g1)
ACCAG469849AG469850
length762805
length of high quality
(start - end)		448 (45 - 492)377 (73 - 449)
definitionCHROMAT_FILE: MSMg01no360_l23.b1 PHD_FILE: MSMg01no360_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:34 2005CHROMAT_FILE: MSMg01no360_l23.g1 PHD_FILE: MSMg01no360_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAATCCGCGGAA
TTCTAGTTATTGTTCCTCTATTTTTCTGAACTTGTTGCTATTAAATTACA
ATAGGCACTTAAAGCTGTCAGGAGCATTGGCTGTGGCACAAGAGTCTCCA
GCCTCTCTGTTCCTGCAGGAGCTATGGAAAGACAGTCTTCTTTCGCTAAG
GTGCATTTAAAAACTAGAACCTTGAGCTTCTAAAGGGAATGAGAATGAAA
CAACAGCACAAAACAAGCAATAACGGGGGGGCAGTTTTATAATACAATTT
TCTTTTCCTATGGGATTCTTGTAAGAACTGAGCACTGTCAAGCTTGTCTG
GCATGGCAAAGATAATTGCTAGCCAAGAAGAAATCTATCAAAATAAGAAG
GATGGGAATAATTGGGCATCAGACATCCACATGAAGAGAGAAGTTACTAA
TCTCTTGCTGTTGAGGATGAGGGTGATGTAAATGAAGGCACTGAAGGAGA
CCCATTCCACACTTCTCCATGAGATGTCATTTGGGAAAAGTCTTCCCATC
CGATAAGAATATGCTGAAGTGAGGGTTTTCTCACTTGCCATCAACTGGGT
GGCTGAAAAAAAACTTTATTTCTCAAGGAAATGTGATTGAAAACCCCCCT
TTGCTTTTCAAAGAAAATTTCTTTTTTTTCCCCCGAGCAAGATTTTTTTT
CTGAAAAAAACTTTCTGGCCCAAAAAGAATTGCCTTTGGGATTCATTACT
AAAATGGAAAAA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAATCCTAGATATTAAGAAAGCTAATA
ACCCAATTAAAAGTAGCTAAGACGAAAGGATGGACCATCTAGAGACTGCC
ATATCCAGGGATCCATCCCATAATCAGCTTCCAAACGCTGACACCATTGC
ATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATATCTGTCTCTTGT
GAGACTATGCCGGGGCCTAGCAAACACAAAAGTGGATGCTCACAGTCAGC
TATTGGATGGATCACAGGGCCCCCAGTGGAGGAGCTAGAGAAGGTAACCA
AGGAGCTAAAGGGAACTGCAACCCTATATGTGGAACAACAATATAAACTA
CCCAGTACTCCCTGGAGCTCTTGTCTCTAACTGCATATGTATCAGAAGAT
GGCCCAGTTGGCCATCAGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTT
TATATGCCTCAGTACAGGGGAACGCCCTGGGCCATTAATAAGAAAGGGTT
GGGGCACCGCTTGGTCAATTTTTGTGGATACCACTGTAAATCCTAATTGG
CATCACTACCCTCACTCTTCCCTTCTTTTTTACCCTCCCAACTACCCCTT
TCCATCGTTTCCACCTCTTTCACATCCCTCCCACTTTACTTTTCCCCTTC
CTCCTTTCACACTGTCCCCCTTCCATAACCTTTTACCTCCTGTACTTTCA
CCATACATATCCTCCTCACGTTCCATATACTCCCATCTTTTTCTCCAACA
TCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_l23.b1 MSMg01no360_l23.b1 CHROMAT_FILE:
MSMg01no360_l23.b1 PHD_FILE: MSMg01no360_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:34 2005
         (448 letters)



>mm_chr3_42163938_42164789
          Length = 852

 Score =  814 bits (421), Expect = 0.0
 Identities = 441/451 (97%), Gaps = 8/451 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctagttattg--ttcctctatttttctgaacttgttgctattaaattacaatagg 61
           |||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctagttattgcttt--tctatttttctgaacttgttgctattaaattacaatagg 261

                                                                       
Query: 62  cacttaaagctgtcaggagcattggctgtggcacaagagtctccagcctctctgttcctg 121
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cacttaaagctgtccggagcattggctgtggcacaagagtctccagcctctctgttcctg 321

                                                                       
Query: 122 caggagctatggaaagacagtcttctttcgctaaggtgcatttaaaaactagaaccttga 181
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 322 caggagctatggaaagacagtcttctttcgctaagatgcatttaaaaactagaaccttga 381

                                                                       
Query: 182 gcttctaaagggaatgagaatgaaacaacagcacaaaacaagcaataacggggggg---- 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 382 gcttctaaagggaatgagaatgaaacaacagcacaaaacaagcaataacggggggggggg 441

                                                                       
Query: 238 cagttttataatacaattttcttttcctatgggattcttgtaagaactgagcactgtcaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cagttttataatacaattttcttttcctatgggattcttgtaagaactgagcactgtcaa 501

                                                                       
Query: 298 gcttgtctggcatggcaaagataattgctagccaagaagaaatctatcaaaataagaagg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcttgtctggcatggcaaagataattgctagccaagaagaaatctatcaaaataagaagg 561

                                                                       
Query: 358 atgggaataattgggcatcagacatccacatgaagagagaagttactaatctcttgctgt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgggaataattgggcatcagacatccacatgaagagagaagttactaatctcttgctgt 621

                                          
Query: 418 tgaggatgagggtgatgtaaatgaaggcact 448
           |||||||||||||||||||||||||||||||
Sbjct: 622 tgaggatgagggtgatgtaaatgaaggcact 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 852
Length adjustment: 10
Effective length of query: 438
Effective length of database: 842
Effective search space:   368796
Effective search space used:   368796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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