BAC Information

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BAC

Clone NameMSMg01-360M08
Chromosome3 (Build37)
Map Location 130,513,624 - 130,514,015
singlet/doubletsinglet
Overlap genenone
Upstream geneRrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34
Downstream geneLOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360M08.T7 (MSMg01no360_m08.b1)MSMg01-360M08.TJ (MSMg01no360_m08.g1)
ACCAG469867AG469868
length772759
length of high quality
(start - end)
274 (48 - 321)385 (75 - 459)
definitionCHROMAT_FILE: MSMg01no360_m08.b1 PHD_FILE: MSMg01no360_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:36 2005CHROMAT_FILE: MSMg01no360_m08.g1 PHD_FILE: MSMg01no360_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTTTTTCTCTTGATTTTTGTTTCTGCCACATACGCGTACGCG
AAGAGATGGTCACCATTTGCCGTTCATTTCTCTCATCTATTTACACCTTG
AGGTGGCCGATCTTCATTGCCAACTTGACTGAATTTACAATCATCTGTGA
GTGTGAAGTGTCTGCAGCAGCATTTGAAGAAAGAAAGCCCTCCTTGAATG
TGTATGGCATCATGTCAGGGGCTGAGGCCCCGTGCTGAAAGGTTTAAAAC
GAGTAGGCCAACGGCACATCTTTTTCATCTGTCTGCTTCCTGACTGCAGA
TGCAGTGTGGCCATCTGCCTTACGCTGGTGCTGTTATTTTCTTCCTACTG
CAATACCTCTATGCCATGAGCCAAACCCACCCGTCCTTCCTTGAGTTGCT
TTCGTCTGTCATTTTGTCCTAACACTGAGACTATTAGCTAATGCACGTGA
TGAATGTACTGAGTCTGTGAGAATGTATACCTTACTGCTTTCACTTGTGT
TAAGCTACCTCAAATTTTGAATCTAACCCCAAAATAAGCTACTCTTCTTT
CTTTGTTGATTTTTTTTTATATTTGCTAGCCCCTTTTTAACCTCTTTCAC
TCTTATACATTTGTATTCTTTTCTCTCCCTATTTTTTTTTCCCCTGTCCT
TTTTTCCTAACATTTATAATTTTCCTCCCCCTCCTCCCTTTTTATTTTAT
TTCTCCAATTTTCTTCCTTTTG
TTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGGAGGGGGCTCTCTGGGAGGCA
GCTATCAAAAGAGCTCACGGTTGGATTACTGCCTCCTATAAGGACTGGCA
GTTATGGCCTATCTCTGCTCTATGAGGATCTAGTACCACAACCACCAACC
TTCAGAGTAAGAGTGTTCTGACCAGAGACACCAATCCCTAACTGTAGGAG
GAAGCATCCACATGATACCTGGTTTAATCCACCTGCTTTGTTGAATTTTG
CTATTTCAGCCAGAGTCATCTTTGGTTTTTGCTCCAAATAAAGATTATAT
AACAATCAAAACTCACTCGTGATTACCACAGCCTCAGATGTTGGCTGTAA
GAGCAGCAACAGCAGCTGCCGCTGGGACTGGGAAGTCAGTCTGCTGATGT
TATGGGGACGACGGGAGAAAGGCTTGGTGCGTGTGCTGGGGATAATGTGG
ATAACTTGAGATTCTTGCATATCTTTTTTGAAAAAGATTTTTTGGAACAT
GATCCCCCTTGCCCCTTGGCTCAAATGTCTTGAGTTTTCGACCTGCTCCC
AAAATTTCGTTCTTTGACACTGCTCCTCCCCTATGCTTTTTCCCCCGTTC
CTCAACATTTTTTCCTCTTTCCTCCCTTTGTCCCCTTTTACTCCATTATC
TTCCTTCCCTTTTCCACTTGCCCCTTTTACCCTCTTTGCGTTTCCTACCA
CTCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_m08.g1 MSMg01no360_m08.g1 CHROMAT_FILE:
MSMg01no360_m08.g1 PHD_FILE: MSMg01no360_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:36 2005
         (385 letters)



>mm_chr3_130513424_130514215
          Length = 792

 Score =  673 bits (348), Expect = 0.0
 Identities = 378/392 (96%), Gaps = 7/392 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggggagggggctctctgggaggcagctatcaaaagag-------ctcacggttggatt 53
           |||||||||||||| ||||||||||||| ||||||||||       ||||||||||| ||
Sbjct: 201 caggggagggggctttctgggaggcagccatcaaaagagtatagccctcacggttggctt 260

                                                                       
Query: 54  actgcctcctataaggactggcagttatggcctatctctgctctatgaggatctagtacc 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgcctcctataaggactggcagttatggcctatctctgctctatgaggatctagtacc 320

                                                                       
Query: 114 acaaccaccaaccttcagagtaagagtgttctgaccagagacaccaatccctaactgtag 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaccaccaaccttcagagtaagagtgttctgaccagagacaccaatccctaactgtag 380

                                                                       
Query: 174 gaggaagcatccacatgatacctggtttaatccacctgctttgttgaattttgctatttc 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggaagcatccacatgatacctggtttaatccacctgctttgttgaattttgctatttc 440

                                                                       
Query: 234 agccagagtcatctttggtttttgctccaaataaagattatataacaatcaaaactcact 293
           |||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 agccagagtcgtcattggtttttgctccaaataaagattatatgacaatcaaaactcact 500

                                                                       
Query: 294 cgtgattaccacagcctcagatgttggctgtaagagcagcaacagcagctgccgctggga 353
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtgattaccacagcctcagacgttggctgtaagagcagcaacagcagctgccgctggga 560

                                           
Query: 354 ctgggaagtcagtctgctgatgttatggggac 385
           ||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggaagtcagtctgctgatgttatggggac 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 792
Length adjustment: 9
Effective length of query: 376
Effective length of database: 783
Effective search space:   294408
Effective search space used:   294408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)