BAC Information

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BAC

Clone NameMSMg01-360M10
Chromosome3 (Build37)
Map Location 5,825,627 - 5,826,105
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620283, Zfhx4, Pxmp3, EG620382, EG667759
Downstream geneLOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360M10.T7 (MSMg01no360_m10.b1)MSMg01-360M10.TJ (MSMg01no360_m10.g1)
ACCAG469871AG469872
length7741,033
length of high quality
(start - end)
479 (69 - 547)---
definitionCHROMAT_FILE: MSMg01no360_m10.b1 PHD_FILE: MSMg01no360_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:37 2005CHROMAT_FILE: MSMg01no360_m10.g1 PHD_FILE: MSMg01no360_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAA
TTCTCAATATTCACCAAGATTTAATTGTTTTTTATATGTGTTTCTCACTT
ATATTCATAAAGTTTAAAGGTGAAAAGATATTATATAGAAAATGTAATAC
ATGATAAAGGTAGTTGACTGGATAAATTTAAACTTTGGTGCTCAAAAGGG
AAATTAAAAAGGCTATGAAGTAGCATGTTTTTTGAAGGAAATGCTCAACA
CTGTAATAACAATCTAATGTTAAACAAATGGCAACAATGTAAATAGGGCA
TTGGACTTTTAAACCTGATTGTTTTGTACTACTTTATCTCATTTCCAATT
CTAATAGTTCTGTCATCTTAAGGTCTCTATTCATCTCAAGAAAATGTAAT
TATCTTGTTAGAATTTCTTCTGTATATTGTGATTTCCATTTAAATGTTTA
AGCCTTCACAGTTCTTTGTCCTAACACAAGCATAAACCTTGAAGAATGTA
TCAATACAAAGCCTTCTTCTATGGTAATAGCTCAATTAAAACCGAGGTAT
AGGGACCATAAATCTCTAAGTCATGATAAACAAATGTTAAACTACTCTAG
AATTTTTTTTTCAACTTCCCCCACTGAATGAATAATAAATTGACCCTCAA
AAAAATCTAGGGAGGGACTTTATTGATTATTATCACGGCCCCCAAAAAAA
AAATGTCCGAAAGAATTCTCAAATGCCCAGCCTCGGATAAATGAGGCCAT
GGGGTTTTTTGTTTGGACTAAAAA
AGGGGTGGTGGCGCGGGGCTAAGAGGGCGGGTTTTCGCAGGGGGGCGGGG
AAAGGGCGTTTTTGTATATCCGTTTGACCCCACTCTTTTGTGTGTGCCCT
TGCGCGTTTTTGTTACGATGTTGAGAGGGACGGGTGGTTATTATTTACGT
CCCTGGTGCCTTGAGTTTGACCGGCTGTTTGCATAGAGGTGGCCGCTTTT
GTTGTCTGTGGAACCATCGCCTTGTGGTCTTGGTAGCCGGCTGGGACGGG
GGACACAGACAATGATATAACTAACATTAAAAATTGTATAAGTCCACAAT
TACATTTGTGCGATCCGCTATTTTAACGGAGTTTATTAGCGTGCGAGATT
ACTTTGCGTACCGATTACGAAGTATACGCAGATTAGGGCGTTTGTCCGGC
GGTTACGGGCGATAGGTTGGATTTAGTGGATTTTCGTGCGTGATCGGGAC
GCCGTGGNGTTGTGGGTGTGTGCATGTACCTGTGTCCGTCGCGGACCGTG
CATTACGCTCGTTTCCTATCGGTTTGGTTGGCTATACGGGCGCAAATAAC
GGCGCATATATGCTATCAATATCGCGTTGATGTGACGCGTGCGCATGGCA
GGACACGGGTATAGGGCGTGATGTTAGTCGGGAAGATGTGAACAACCAAC
GCGCGTTATGGTTTCGCCCGCCATTTGACCACTGCACGTTGATGGGTGGT
ATACCCCACGCTGTTTTTATGAGAAGGTAAATATTATGTGATAGTTGCGC
ATTTACCGTGCGCGGGTTTGTGGTGTGTCGGCCATCCGCGTGTTTTACGT
TTCCACACTACCGCCGACCGATCCAGGCGATAGCAGGTCACGTTTACACT
CGTACTGGTTGATAATGTTCTAACGATTGATGTCCCGCTCTTCCGTCGGG
CATCTTGTATACGCGCCTTGTCCGGAGCATATGGTGTCGCGCGATTGACC
GGACGTGTGACGGTCTAGCCGGAGTATACCCTACACCTACATGTGTATCA
GCATGTGCGGGTCCGTATGGCTCTTTGATCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_m10.b1 MSMg01no360_m10.b1 CHROMAT_FILE:
MSMg01no360_m10.b1 PHD_FILE: MSMg01no360_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:37 2005
         (479 letters)



>mm_chr3_5825427_5826305
          Length = 879

 Score =  841 bits (435), Expect = 0.0
 Identities = 468/479 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaattgttttttatatgtgtttctcacttatattcataaagtttaaaggtgaaaaga 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atttaattgttctttatatgtgtttctcacttatattcataaagtttaaaggtgaaaaga 620

                                                                       
Query: 61  tattatatagaaaatgtaatacatgataaaggtagttgactggataaatttaaactttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tattatatagaaaatgtaatacatgataaaggtagttgactggataaatttaaactttgg 560

                                                                       
Query: 121 tgctcaaaagggaaattaaaaaggctatgaagtagcatgttttttgaaggaaatgctcaa 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 559 tgctcaaaagggaaattaaaaaggctatgaagtaacatgttttttgaaggaaatgctcaa 500

                                                                       
Query: 181 cactgtaataacaatctaatgttaaacaaatggcaacaatgtaaatagggcattggactt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 cactgtaataacaatctaatgttaaacaaatgacaacaatgtaaatagggcattggactt 440

                                                                       
Query: 241 ttaaacctgattgttttgtactactttatctcatttccaattctaatagttctgtcatct 300
           |||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 ttaaacctgaatggattgtactactttatctcatttccaattctaatagttctctcatct 380

                                                                       
Query: 301 taaggtctctattcatctcaagaaaatgtaattatcttgttagaatttcttctgtatatt 360
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 379 taaggtctctattcatctcaagaaaatgtaattaccttgttagaatttcttctgtaaatt 320

                                                                       
Query: 361 gtgatttccatttaaatgtttaagccttcacagttctttgtcctaacacaagcataaacc 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 319 gtgatttccatttaaatgtttaagccttcatagttctttgtcctaacacaagcataaacc 260

                                                                      
Query: 421 ttgaagaatgtatcaatacaaagccttcttctatggtaatagctcaattaaaaccgagg 479
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttgaagaatgtatcaataaaaagccttcttctatggtaatagctcaattaaaaccgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)