Query= MSMg01no360_m19.b1 MSMg01no360_m19.b1 CHROMAT_FILE:
MSMg01no360_m19.b1 PHD_FILE: MSMg01no360_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:38 2005
(653 letters)
>mm_chr3_82647388_82648440
Length = 1053
Score = 1232 bits (637), Expect = 0.0
Identities = 649/653 (99%)
Strand = Plus / Plus
Query: 1 tgagcgagctcagaggtaaggaaatggagaagagctgccctgtaagactgaccttgagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagcgagctcagaggtaaggaaatggagaagagctgccctgtaagactgaccttgagcc 260
Query: 61 tgtactgaactcaaggagacagcaaactgaactgaactgaactgacgaagtgtttcaatt 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tgtactgaactcaaggagacagcaaacttaactgaactgaactgacgaagtgtttcaatt 320
Query: 121 ctggttaggagcaaggacattttgtgatgtgataaagcacctccataataaggaacttac 180
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 321 ctggttaggagcaaggacattttgtgatgtgataaaccacctccatagtaaggaacttac 380
Query: 181 acctttctctgaataaaggcaatgtcgggtagactttaaattctctataatttttcattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctttctctgaataaaggcaatgtcgggtagactttaaattctctataatttttcattt 440
Query: 241 gcagtatctggcattcaataacaactaataatactagaaaataaactagatcacctaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagtatctggcattcaataacaactaataatactagaaaataaactagatcacctaaag 500
Query: 301 ccaacagaaatagcagtcaacaaaaacagacctctagatagttagacaatacattttcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaacagaaatagcagtcaacaaaaacagacctctagatagttagacaatacattttcta 560
Query: 361 acctggataataaaataattatgtcttgacagtggcacaaaaacccacatgtagataaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctggataataaaataattatgtcttgacagtggcacaaaaacccacatgtagataaat 620
Query: 421 ggaaaaatacaggacccagaaataagctcactcttaacagaggtgcttgctagtgggtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaaaatacaggacccagaaataagctcactcttaacagaggtgcttgctagtgggtgt 680
Query: 481 ctgaggaaagacagtgatgaaaaactagagaactatgttataatataatgctaatccact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgaggaaagacagtgatgaaaaactagagaactatgttataatataatgctaatccact 740
Query: 541 tccatactgcacaaaaagtgaatgggtcaaataaataatgcagctaatatgtctaaacta 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 tccatactgcacaaaaagtgaatgggtcaaataaataatgcagctaaaatgtctaaacta 800
Query: 601 taggggaaacatgtcaagatatagggataggaagtgactttctaaatagcttg 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taggggaaacatgtcaagatatagggataggaagtgactttctaaatagcttg 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_m19.g1 MSMg01no360_m19.g1 CHROMAT_FILE:
MSMg01no360_m19.g1 PHD_FILE: MSMg01no360_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:38 2005
(560 letters)
>mm_chr3_82744648_82745615
Length = 968
Score = 1044 bits (540), Expect = 0.0
Identities = 558/568 (98%), Gaps = 8/568 (1%)
Strand = Plus / Minus
Query: 1 tggtggtcacaatgacaaaactctcgaccagtcagtggttcacagtaataggccgactta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tggtggtcacaatgacaaaactctcgaccagtcagtggttcacagtaataggccgactta 709
Query: 61 tcacagtcctggttgtctagggttgggcagctctggtcaacgttgtgagctgctgggcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tcacagtcctggttgtctagggttgggcagctctggtcaacgttgtgagctgctgggcat 649
Query: 121 gcctagagggctccatacctttcagtctaagatggaggggggggg---caaagagggatt 177
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 648 gcctagagggctccatacctttcagtctaagatggagggggggggggacaaagagggatt 589
Query: 178 tgatttccaggcagacttggaacatgccggagacttcttttcacggcatgttgaaagctg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgatttccaggcagacttggaacatgccggagacttcttttcacggcatgttgaaagctg 529
Query: 238 ctgtgtgatatacctgcgaattttctagaggttgacacgtgtcaggcagctcagctcaaa 297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctgtgtgatacacctgcgaattttctagaggttgacacgtgtcaggcagctcagctcaaa 469
Query: 298 cccaagattgcatcttccacttcaagggctagcaggaggtgaaacggcaataggtctgcc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cccaagattgcatcttccacttcaagggctagcaggaggtgaaacggcaataggtctgcc 409
Query: 358 cagcctctgctgggaccggggcttcaaggaac-----attttattttctataacctaaac 412
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 408 cagcctctgctgggaccggggcttcaaggaacattttattttattttctataacctaaac 349
Query: 413 atggcatatgtctaaaaaaataaatgtcaagacttaatggaataaacaggatggaagtcc 472
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atggtatatgtctaaaaaaataaatgtcaagacttaatggaataaacaggatggaagtcc 289
Query: 473 ttttgtctttgtataccagtacttattttcctctcacctggcacattaattctgcccaca 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttttgtctttgtataccagtacttattttcctctcacctggcacattaattctgcccaca 229
Query: 533 tgctccagccctgtgtgacagcacagaa 560
||||||||||||||||||||||||||||
Sbjct: 228 tgctccagccctgtgtgacagcacagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 968
Length adjustment: 10
Effective length of query: 550
Effective length of database: 958
Effective search space: 526900
Effective search space used: 526900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
