BAC Information

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BAC

Clone NameMSMg01-360N13
Chromosome3 (Build37)
Map Location 96,225,802 - 96,225,955
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc
Downstream geneBC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360N13.T7 (MSMg01no360_n13.b1)MSMg01-360N13.TJ (MSMg01no360_n13.g1)
ACCAG469921AG469922
length1,094751
length of high quality
(start - end)
---159 (322 - 480)
definitionCHROMAT_FILE: MSMg01no360_n13.b1 PHD_FILE: MSMg01no360_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:42 2005CHROMAT_FILE: MSMg01no360_n13.g1 PHD_FILE: MSMg01no360_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCTCGCTTCACGACGCNNNNTGGTGGTGCAATATATGGGAAGTAGAG
GGAGGGAAACATCNNGGTATAAACCACAGAAAATGTCATGGCACAGTATG
TGTTTCCAGCGATAAGATTGTGCTTTTGTCTTTCGGTAGCGTTCCCCCCT
CCTTTATTGGGGTGCTTTTTTTGATCTGTAGCAGTTACCACAGAAGACGC
ATTTATATATAGACGAGGGGGTACACAAAGTCAGATACCAAAGGCACAGG
TGCCGAGGATGGCACTCCACGGGATACATCGAAAAATCGACGACCAAGAG
GGCACGCCAGAGAAAATATAACTAGAAAAAACGATAAAGAAAGAAAGCCC
CGGGGCACGAGACACGAGAGGCTTAAAGAGCGCGTATGAGAAAATAGATA
GGATGGTATAGTAAAGGATACTGTAAAAAAAACAAAAAGCAAATGGAGTA
TGAGAAAGAGAGCTGTATAAAAGCGAGAAAAAACTGAAAATAAAATCTCC
CAATAATAAAATCGTTAGAAGAGATCAGGCGTAATATTGGGGGATAACCT
GTACACAGAGATAATAGTAAATTGTATGGCGCGAGTGTATATCGCAGTTA
GATAGATTGTGTGTATGGTCTCGATCAATAGTGACGACGACATCACTTGT
CCACGCCAATATCCCACAATAAGAGCGACCTTGAAGAGTTCATTAGAGAT
TACATTAACAACGTCGCGGACCCACATACAGTGACATCTACGGGAAGCTT
TATCGACGAGAGTTATATTAGACTAAGAACAGGTTAATTTCCTCTCCTAA
ATATTGTACAGCATATATCCTTCGCGTTACAATTCTGTGGATTATTTTAT
TTTATATATCCGACTTTCTACTGGGAGGAGGCAGATAAGTTATCGATCAC
AGCTGTTACAACGGATCAGTTATAAATAAATTCCGTTGATCTTAGGATTA
TATTAGTTGAATATAGCGTATCCTATGCAGATACGACGAAAGAGTTTGAG
TAGAAATATAAGTACCAGACAACATAAGAAGGAAAATAAAGATACAAACA
GAAGACTATAATCAAAGAGCGGAATAAGCGAGATCGAAGATGGN
TGCTAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCTCCTTCCAAGTCTGTAGACCCCCATAA
GCTATTATTATTATTTTTTTTGTTTAAACAGTCCTTTTGTTTGTTTTTCC
AAGACAAGGTTTCTCTGTGTAGCCTTGGCTGTCTGGGAACTTGCTCTGTA
CATGAACCTTCTTCACACTCAAGAGATAGATCCTCCTGCCTCTGCTTCCT
GAGCACAGGGATTAAAGGTGTGTGCTACTACTGCCTGCCATCAGTCAATT
TTGTTTTCCCAAGTTTTTTTCAATAATATCCTCACTTGTTTCTGATGTTT
TTCGTAACTTCGGTGGAAAAAAAGTCAATGGAACCATCGATAATCCAGTG
TAATATTCAAATTCGCAATGCAGCCTTTTCCCCATTATATTGGTGGCACA
GCAAACTTTCTAAATCACTTCCTGACGAGGAAGGTATGGTGGTCAGCACC
TACACATACTCTTACACTTACAAACTGTCCAGGACGCTTTTCAAGGAGCC
CAGTTTGCGTTCTCACCTATGCATATCCTGGGAAAGACTGGCCTGAATTA
GCTTGCTTTGCTCCTGTTCTCGTATCTCATCTTTCACTATTTCCCTTACT
TTAATCTTTCCGCTGCCTGTTCCCCTATGTTCCCTTTTCCTCCTTCATAT
GATCTCTTCTTATTAACTCATCTCTTTATGCCACTTTATCTACACTTTCA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_n13.g1 MSMg01no360_n13.g1 CHROMAT_FILE:
MSMg01no360_n13.g1 PHD_FILE: MSMg01no360_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:42 2005
         (159 letters)



>mm_chr3_96225602_96226159
          Length = 558

 Score =  261 bits (135), Expect = 1e-74
 Identities = 150/155 (96%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataatatcctcacttgtttctgatgtttttcgtaacttcggtggaaaaaaagtcaatgg 60
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct: 354 aataatatcctcacttgtttctgatgtttttcataacttcagtggaaaaaaagtcgatgg 295

                                                                       
Query: 61  aaccatcgataatccagtgtaatattcaaattcgcaatgcagccttttccccattatatt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaccatcgatattccagtgtaatattcaaattcgcaatgcagccttttccccattatatt 235

                                              
Query: 121 ggtggcacagcaaactttctaaatcacttcctgac 155
           ||||||||| |||||||||||||||||||||||||
Sbjct: 234 ggtggcaca-caaactttctaaatcacttcctgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 558
Length adjustment: 8
Effective length of query: 151
Effective length of database: 550
Effective search space:    83050
Effective search space used:    83050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)