BAC Information

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BAC

Clone NameMSMg01-361K18
Chromosome3 (Build37)
Map Location 21,448,606 - 21,640,626
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665094, LOC100040325
Downstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593, LOC100040378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361K18.T7 (MSMg01no361_k18.b1)MSMg01-361K18.TJ (MSMg01no361_k18.g1)
ACCAG470543AG470544
length767797
length of high quality
(start - end)		550 (47 - 596)351 (76 - 426)
definitionCHROMAT_FILE: MSMg01no361_k18.b1 PHD_FILE: MSMg01no361_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:47 2005CHROMAT_FILE: MSMg01no361_k18.g1 PHD_FILE: MSMg01no361_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,640,081 - 21,640,626)(21,448,606 - 21,448,954)
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTAATGAAGCTTTGGATCAGAACAGGGATGGCTGCCACCATTA
CTGTGATGAATAAGCTTTCCAGGAGGAAACTATCAGCAGCAGCATCTCTC
CAGTCTAGAATGGCTCGAATTTCAAATGTTCAGAGTTACTTAAAGGAAGC
TCGCCAGGCCATCCAAACAATCTGGTGTAGACTTATTATTAAGGAGTGTG
CTTTCAACTCTTGTCTTCAGATAAGCATCAATCCCTGTTGCTTTCTTTTT
CTGAAGGCTTTTATATACTTAAATAAAATAGGTGGGTATGAAAGCTTTTC
TCTCATAAAATTGTATGGCTCCAAGGAGACTATGCAAAGAAATTCAGCCC
ACAGTATGATGTATGATGTATACTCCCTAAAAGAAGACTGTGCAGGGTTC
TGACATTCTTTCAGTCCCATCGTCATTCCTGCCTGTGTCTCATGTATAGA
TAGCATCATGGGCAGCAGTTATTGGACCTGGATTGCAGGGGGTGATAAAG
CATGGNCCTTCTTCCTCCACCTTTCTCTGGCCTGACACTGAAGATTTTTG
GAATAGACCAAAAAGAATCACTCCTTGTTAGAAATGTCTAGGTGAAATGA
GGGGAACAAGTTAATCCTGCATCTCCCGTCTGAAAAATTCCTCCAGGCTG
TTGTTTCAGGAAACCATGTCTATATGTAAGATACCCCTCTAACATGGCCG
CCCGGTAAAATCCATAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGAGAGGATTAGCAATAGGTTCA
GGTGAGGTATAGATTTGTTTACTGAGGCTTCCTAAAGACAGGGCCCGTGC
ACAGCACCTAATCAAGGCTATTTGCAGGGTTTGGAGGGAGATCAGGGCAG
CCTGAACTTTCGCTGCCCTTTAGGTCACACCGGGAGAGGCCGCCCCTCCT
TCTGTGGGATCAGCAACAGCAGCTCTCAAACCTTTTTATAGCCACTCTGC
CGCTTAAATTAACCTGAAAAGCCTTTCGTGGCCAAGCCTCAGCACAGGTT
CAGGCAACACGATAAGACTTTCCTTAATTGAGATCTTTGCTGGAGGATGC
TTGTGCCTTTCTCCCCAAGCCCAATCTGAGACTTTTCTTTTCATCTATCT
CTGAGGTTCTTATGACCGTACCGATGTAAGCATATATCCGACTCTCTGTG
TTTTTCACATGTTCCCTTTAAAATCCACTCCCTGGCCCAGGCGAATTTAT
ACCCCTTTTCCCCCCTCTTTACCGTTTCCCCCCTTTACTCTTCCCACCCC
CCCTTTTTCTTCCCTTTTCCCCCTTCTCTTCCTTTCCCACCCTTCTCCTC
TTCTCTCTCCTCCTTTTTTTTTCCCCTCTATTTTTTTATCATTCTTTCCT
ACTCCTCCTAAACCTTTTTTCCCTTTCCCTCTTTTTTTCCTTCCCTTCCC
CCTCTTTCTACCCCTTTTCTTAACCACTCCCTTCCCCCTTTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_k18.b1 MSMg01no361_k18.b1 CHROMAT_FILE:
MSMg01no361_k18.b1 PHD_FILE: MSMg01no361_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:47 2005
         (550 letters)



>mm_chr3_21639877_21640826
          Length = 950

 Score = 1027 bits (531), Expect = 0.0
 Identities = 542/546 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaatgaagctttggatcagaacagggatggctgccaccattactgtgatgaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gaattcagtaatgaagttttggatcagaacagggatggctgccaccattactgtgatgaa 691

                                                                       
Query: 65  taagctttccaggaggaaactatcagcagcagcatctctccagtctagaatggctcgaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 taagctttccaggaggaaactatcagcagcagcatctctccagtctagaatggctcgaat 631

                                                                       
Query: 125 ttcaaatgttcagagttacttaaaggaagctcgccaggccatccaaacaatctggtgtag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttcaaatgttcagagttacttaaaggaagctcgccaggccatccaaacaatctggtgtag 571

                                                                       
Query: 185 acttattattaaggagtgtgctttcaactcttgtcttcagataagcatcaatccctgttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 acttattattaaggagtgtgctttcaactcttgtcttcagataagcatcaatccctgttg 511

                                                                       
Query: 245 ctttctttttctgaaggcttttatatacttaaataaaataggtgggtatgaaagcttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctttctttttctgaaggcttttatatacttaaataaaataggtgggtatgaaagcttttc 451

                                                                       
Query: 305 tctcataaaattgtatggctccaaggagactatgcaaagaaattcagcccacagtatgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tctcataaaattgtatggctccaaggagactatgcaaagaaattcagcccacagtatgat 391

                                                                       
Query: 365 gtatgatgtatactccctaaaagaagactgtgcagggttctgacattctttcagtcccat 424
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtatcatgtatactccctaaaagaagactgtgcagggttctgacattctttcagtcccat 331

                                                                       
Query: 425 cgtcattcctgcctgtgtctcatgtatagatagcatcatgggcagcagttattggacctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cgtcattcctgcctgtgtctcatgtatagatagcatcatgggcagcagttattggacctg 271

                                                                       
Query: 485 gattgcagggggtgataaagcatggnccttcttcctccacctttctctggcctgacactg 544
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 270 gattgcaggaggtgataaagcatggcccttcttcctccacctttctctggcctgacactg 211

                 
Query: 545 aagatt 550
           ||||||
Sbjct: 210 aagatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_k18.g1 MSMg01no361_k18.g1 CHROMAT_FILE:
MSMg01no361_k18.g1 PHD_FILE: MSMg01no361_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:47 2005
         (351 letters)



>mm_chr3_21448406_21449156
          Length = 751

 Score =  636 bits (329), Expect = 0.0
 Identities = 344/349 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagaggattagcaataggttcaggtgaggtatagatttgtttactgaggcttcctaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagagaggattagcagtaggttcaggtgaggtatagatttgtttactgaggcttcctaa 260

                                                                       
Query: 61  agacagggcccgtgcacagcacctaatcaaggctatttgcagggtttggagggagatcag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacagggcccatgcacagcacctaatcaaggctatttgcagggtttggagggagatcag 320

                                                                       
Query: 121 ggcagcctgaactttcgctgccctttaggtcacaccgggagaggccgcccctccttctgt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagcctgaactttcactgccctttaggtcacaccgggagaggccgcccctccttctgt 380

                                                                       
Query: 181 gggatcagcaacagcagctctcaaacctttttatagccactctgccgcttaaattaacct 240
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ggggtcagcaacagcagctctcaaacctttttatagccactctgctgcttaaattaacct 440

                                                                       
Query: 241 gaaaagcctttcgtggccaagcctcagcacaggttcaggcaacacgataagactttcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaagcctttcgtggccaagcctcagcacaggttcaggcaacacgataagactttcctt 500

                                                            
Query: 301 aattgagatctttgctggaggatgcttgtgcctttctccccaagcccaa 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattgagatctttgctggaggatgcttgtgcctttctccccaagcccaa 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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