BAC Information

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BAC

Clone NameMSMg01-362A11
Chromosome3 (Build37)
Map Location 132,689,454 - 132,690,049
singlet/doubletsinglet
Overlap geneGstcd
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt
Downstream geneInts12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362A11.T7 (MSMg01no362_a11.b1)MSMg01-362A11.TJ (MSMg01no362_a11.g1)
ACCAG470812AG470813
length7451,281
length of high quality
(start - end)		599 (45 - 643)---
definitionCHROMAT_FILE: MSMg01no362_a11.b1 PHD_FILE: MSMg01no362_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:15 2005CHROMAT_FILE: MSMg01no362_a11.g1 PHD_FILE: MSMg01no362_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTATAAATTGCTGGTTAATTCTGACCCCTTCCTTTCGCTTCCTGTTCCT
TGCATCGGTGTCTGAGCCCTTATTGTTCATCTGTGGGTGCAAAATTTTCT
TAGAAATTTTCCCGCTGCACTCGCTAGAAGTTTTGGACTATGCCAGCATT
GCTTCAGTACTCAGTTTCTGCCCATGTTCCTTCTTCCCTTGGTTAACGCA
GGTCTTTCTCCTTGTCTGGTACTCTCTGCTCTGTACCCTTAGGAGCCTTT
TATTAGGCTGTAGTCTAACTGGCATGTTTGAGTCAATAAATATATCAGAA
AATCTACTAGATACAAACCAGTACACATGTAGTTCAGAGTTGGAAGGATA
TCGTCATTTTCAGTCTCACTGAGAGTCTTTTAAAATCTTCATAACCAGCA
TCCCGTTACCCATTCATGGAAGATCTGTGCTGCCATGAGCACAGCAAACA
GACTTCTCAGCCCCTTCTGTACAGTGAGGCTTCAGTGCATTCTTGTATGT
GGTTTTATAGAGAGAATTGTCAGTACTGAGGACTAACAGTGGACAGTGTA
CCTAACGTATTACCACAGGATTCCAATACACAAGGGTGATCCTTAGTAGT
AATTTTGTCCTTAGTCACTTGAATAATCCATTATTTCCTCATGATTTTTC
CCAAACCTATCAACTATAAAAGGATTCCCGTGCTAATTTTTGTTA

ATTTTTTTTTCCAAANTCAAGAAAAATTATCAAGAATGCCTGTCGCTCTG
GTGTAGAGACCATAAGACAGTGTTTCATATGAAACTACGAAGCCCGCGAA
ACGGTAGAATCGTGGAAATGAAGTCGGGCGCGGGGCGAGCGAGGATCAGG
GGAATTAATCTTCCGACGGGATCGGCGGAGGTATATGAAGTGGGATATAT
TGCGTACCGCCAACACGACAACATCTCACTATGTTTTACGCTCCCTCTAC
TATATCACCGCCCCGCTCCACGCAACTCGAACAATCAATATCTTTCCGAA
ACGAGGGTGCCGAACGAATTATAATAGGAGAGGAAGATGAGAAATCGCAT
TCTCGGAGGAGCGATATCACTGCTGTAAGTTAGTAAGTTATAAATATAAG
ATTAATATTAGACGTATAAAAGTGTATTCTCGGCGCCGCCCCGATGCACG
GCCCTGTTATCTTTCTTTACTTTATTATCCGCGCAACCACGACACCAGAC
CAANAAACCACCCATACTCTAAAACGACACTTTACACAGCACAGATTATC
AAACATCCTAATACAACAACGTAATTAATATAATAACGTACACACCTGGC
AATTCGGGCGAACCGGCGCGCACTCATCGTCATAGAGATATAATCCGCTA
CGGGCCGCGTACTTTCGCGCCTCATATATCTTATAATCTCCGCCGTCATC
CATACGGCTATGATACTAGTCTGATTGATGTGAGTTGAGGGAGCCAGTGG
AAGAATACGTTGCAGATGACTACCAAGAGTAGACGCGATTAGGGCACCGT
AATACATAGTATTATTACTATAAANTAGGATTATATCTACGAGTCATAGC
TATACCGTGTCGGTGTTGATGTTCCCGTCGTCTATTTTCCCGCTATATCT
ATTCTCACTCCATGCTGTCTTCTATATAATTTTTCGGCCTCGCCGCCACA
CCCTCCCATATTACATACCACCGACCCACTCTATTCGTCTTGTTTTATCG
CCGTACTACACACAACGCATATATAATATAATCATATAACACACCGAAAG
TATAGGGCAACGTGATGCAACAGTATATATTGTCCTTACTAGTGTGATAT
GCGGGATGCGACGCGGCCGGTTAGCAGCGCGAGATAGTGTATACACGATA
GACACCATGACCACACTAGAAGTGAGAATATGACTGCAAACATGTAAATC
TNTTATAACGCCACGACGAACACGCATATATAATCCATACTTATTTATAG
TTATACTGATACACGCGAGCGCGCGACGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_a11.b1 MSMg01no362_a11.b1 CHROMAT_FILE:
MSMg01no362_a11.b1 PHD_FILE: MSMg01no362_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:15 2005
         (599 letters)



>mm_chr3_132689250_132690249
          Length = 1000

 Score = 1129 bits (584), Expect = 0.0
 Identities = 593/596 (99%), Gaps = 1/596 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaatt-ataaattgctggttaattctgaccccttcctttcgcttcctgttccttgcatcg 63
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaattcataaattgctggttaattctgaccccttcctttcgcttcctgttccttgcatcg 741

                                                                       
Query: 64  gtgtctgagcccttattgttcatctgtgggtgcaaaattttcttagaaattttcccgctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtgtctgagcccttattgttcatctgtgggtgcaaaattttcttagaaattttcccgctg 681

                                                                       
Query: 124 cactcgctagaagttttggactatgccagcattgcttcagtactcagtttctgcccatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cactcgctagaagttttggactatgccagcattgcttcagtactcagtttctgcccatgt 621

                                                                       
Query: 184 tccttcttcccttggttaacgcaggtctttctccttgtctggtactctctgctctgtacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tccttcttcccttggttaacgcaggtctttctccttgtctggtactctctgctctgtacc 561

                                                                       
Query: 244 cttaggagccttttattaggctgtagtctaactggcatgtttgagtcaataaatatatca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 560 cttaggagccttttattaggctgtagtctaactggcatgtttgagtcaataaatatacca 501

                                                                       
Query: 304 gaaaatctactagatacaaaccagtacacatgtagttcagagttggaaggatatcgtcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaaaatctactagatacaaaccagtacacatgtagttcagagttggaaggatatcgtcat 441

                                                                       
Query: 364 tttcagtctcactgagagtcttttaaaatcttcataaccagcatcccgttacccattcat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttcagtctcactgagagtcttttaaaatcttcataaccagcatcccgttacccattcat 381

                                                                       
Query: 424 ggaagatctgtgctgccatgagcacagcaaacagacttctcagccccttctgtacagtga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 380 ggaagatctgtgctgccatgagcacagcaaacagacttctcagccccttctgtacagtgg 321

                                                                       
Query: 484 ggcttcagtgcattcttgtatgtggttttatagagagaattgtcagtactgaggactaac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcttcagtgcattcttgtatgtggttttatagagagaattgtcagtactgaggactaac 261

                                                                   
Query: 544 agtggacagtgtacctaacgtattaccacaggattccaatacacaagggtgatcct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agtggacagtgtacctaacgtattaccacaggattccaatacacaagggtgatcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1000
Length adjustment: 10
Effective length of query: 589
Effective length of database: 990
Effective search space:   583110
Effective search space used:   583110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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