BAC Information

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BAC

Clone NameMSMg01-362A15
Chromosome3 (Build37)
Map Location 143,326,473 - 143,479,768
singlet/doubletdoublet
Overlap geneEG621809
Upstream geneEG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik, EG668889
Downstream geneLOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362A15.T7 (MSMg01no362_a15.b1)MSMg01-362A15.TJ (MSMg01no362_a15.g1)
ACCAG470820AG470821
length750749
length of high quality
(start - end)		484 (69 - 552)533 (76 - 608)
definitionCHROMAT_FILE: MSMg01no362_a15.b1 PHD_FILE: MSMg01no362_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:15 2005CHROMAT_FILE: MSMg01no362_a15.g1 PHD_FILE: MSMg01no362_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,479,362 - 143,479,768)(143,326,473 - 143,327,005)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTACGTGTCCGAACCAGTCGTTCTTTGATGCTTGGGCCTTCTTT
TGGGCTCTTTTCCATCAGTCGATTGACGTAATCCAACTTCGATGCAATAT
TTTTTTGTTTTGTTTTAGCTTGTTGTGTTTTGTTATTATTCATTAGAAGT
CCATTTGTTTTTTTCTTTAATAAGGGACAGAAGGGGAGTGGATCTGCATG
TGAGAGGAGATAGACAGCAACTGGAAGGAGTAGAGGGGAGAATCTGGATA
TATTGTATGAGAAACTAATTTATTTTCAATAAAAGGAGAGAGAGAAGGAG
TGGGGGAGGGCAGAACTCAGAGGCAAGAAAAGTGTTTCACCTAACATAAG
GGATGTCTTCAAGGACAATTGGTATTTAGTTTTGATTTCTGGTGGAAGGA
TGAGGTTTTACTAGACAGAAACAGTGGAGGTAAAAACACAGTATTAATGG
GGGTGTTTTCTCATAATTTTTCAGAGTCCATGCCAGTTTTAACTGTGAAG
TTGTGGGGGACAGATGAAGCCTTAATAGACCGATTAAGTCCAGATTGTAT
AGGAATAACATCCATCTCGCTAGTTAACAAATAATCTAAACTCCTTCTAG
GTACCTAGAGTATACCCCTTAAGTTATGCCCAGCTTGCTCCATGACATGC
ATGGTTGATACCATATGCTTTTATGTATATGTTATTGGTATCTTTCTAAG


GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGATGGGAACTCTAATAAATGTA
GTAGCATGCTGTAATAAAGAGCACTAGAAAATGGATGAGGTCTAACAAAA
TTATTCATAAAGAGAAATGGAAAGGGATGCCATGCTGAGCGGTCCCATGC
AGTTATATAGACACTAACAAGGTTATCCCTGGAAGCTGAGTGCTAGTACA
TTCACATATGTTTTCTAACTAGCACAAAGAGAGACTGTTTTTATCTCGAA
GAACAGGAGAGCCTGGAGTTAGAGGTGTGCTAAATCTTGCTCCTGATTTT
TAATAATTCAGAGCCAAATAGCAATAATGGCTCACGTAGGGTCGGTTTAA
TGAACAAAGCAACCTCACTTCAGGTTGTTCGATGCTAAGGCTCTCCGCCG
AGTTGCTAACTGGTGTACTTTACAGCTATCTCCAGGGTTCTTTTTGATAT
GATATTATCCTCTTCACACACTGTGTTTTCTATACACCAAAATATAATGT
GAAACCATGAGCGAGGATGGAAAACCCTGAAAGAATGTTCAAATGAGCCT
GTGAGTTCCTGCTTTGGAGGTACAGCGATGTCCGAAAAACAGGTAGACGC
CCTGCTTACGCACTCCTCGGAGTCCTTATGACTCACTCTCATTCACGGAG
TTTGTTACGGAGCTGGGAGTATCTTTGGATTTTACGAGAGACATTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_a15.b1 MSMg01no362_a15.b1 CHROMAT_FILE:
MSMg01no362_a15.b1 PHD_FILE: MSMg01no362_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:15 2005
         (484 letters)



>mm_chr3_143478885_143479768
          Length = 884

 Score =  779 bits (403), Expect = 0.0
 Identities = 406/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 77  caatatttttttgttttgttttagcttgttgtgttttgttattattcattagaagtccat 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 caatatttttttgttttgttttagcttgttgtgttttgttattattcattagaagtccat 825

                                                                       
Query: 137 ttgtttttttctttaataagggacagaaggggagtggatctgcatgtgagaggagataga 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ttgtttttttctttaataagggacagaaggggagtggatctgcatgtgagaggagataga 765

                                                                       
Query: 197 cagcaactggaaggagtagaggggagaatctggatatattgtatgagaaactaatttatt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cagcaactggaaggagtagaggggagaatctggatatattgtatgagaaactaatttatt 705

                                                                       
Query: 257 ttcaataaaaggagagagagaaggagtgggggagggcagaactcagaggcaagaaaagtg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttcaataaaaggagagagagaaggagtgggggagggcagaactcagaggcaagaaaagtg 645

                                                                       
Query: 317 tttcacctaacataagggatgtcttcaaggacaattggtatttagttttgatttctggtg 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tttcacctaacataagggatgtcttcaaggacaattggtatttagttttgatttctggtg 585

                                                                       
Query: 377 gaaggatgaggttttactagacagaaacagtggaggtaaaaacacagtattaatgggggt 436
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 584 gaaggatgaggttttactagacagaatcagtggaggtaaaaacacagtattaatgggggt 525

                                                          
Query: 437 gttttctcataatttttcagagtccatgccagttttaactgtgaagt 483
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gttttctcataatttttcagagtccatgccagttttaactgtgaagt 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_a15.g1 MSMg01no362_a15.g1 CHROMAT_FILE:
MSMg01no362_a15.g1 PHD_FILE: MSMg01no362_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:15 2005
         (533 letters)



>mm_chr3_143326273_143327205
          Length = 933

 Score = 1015 bits (525), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgatgggaactctaataaatgtagtagcatgctgtaataaagagcactagaaaatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatgggaactctaataaatgtagtagcatgctgtaataaagagcactagaaaatgga 260

                                                                       
Query: 61  tgaggtctaacaaaattattcataaagagaaatggaaagggatgccatgctgagcggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaggtctaacaaaattattcataaagagaaatggaaagggatgccatgctgagcggtcc 320

                                                                       
Query: 121 catgcagttatatagacactaacaaggttatccctggaagctgagtgctagtacattcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgcagttatatagacactaacaaggttatccctggaagctgagtgctagtacattcac 380

                                                                       
Query: 181 atatgttttctaactagcacaaagagagactgtttttatctcgaagaacaggagagcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgttttctaactagcacaaagagagactgtttttatctcgaagaacaggagagcctg 440

                                                                       
Query: 241 gagttagaggtgtgctaaatcttgctcctgatttttaataattcagagccaaatagcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagttagaggtgtgctaaatcttgctcctgatttttaataattcagagccaaatagcaat 500

                                                                       
Query: 301 aatggctcacgtagggtcggtttaatgaacaaagcaacctcacttcaggttgttcgatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggctcacgtagggtcggtttaatgaacaaagcaacctcacttcaggttgttcgatgc 560

                                                                       
Query: 361 taaggctctccgccgagttgctaactggtgtactttacagctatctccagggttcttttt 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaggctctctgccgagttgctaactggtgtactttacagctatctccagggttcttttt 620

                                                                       
Query: 421 gatatgatattatcctcttcacacactgtgttttctatacaccaaaatataatgtgaaac 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatatgatattatcctcctcacacactgtgttttctatacaccaaaatataatgtgaaac 680

                                                                
Query: 481 catgagcgaggatggaaaaccctgaaagaatgttcaaatgagcctgtgagttc 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgagcgaggatggaaaaccctgaaagaatgttcaaatgagcctgtgagttc 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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