BAC Information

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BAC

Clone NameMSMg01-363A08
Chromosome3 (Build37)
Map Location 33,769,928 - 33,770,210
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp13, Pex2, EG545512, LOC100041058, Ttc14, Ccdc39
Downstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363A08.T7 (MSMg01no363_a08.b1)MSMg01-363A08.TJ (MSMg01no363_a08.g1)
ACCAG471565AG471566
length763759
length of high quality
(start - end)
489 (40 - 528)284 (82 - 365)
definitionCHROMAT_FILE: MSMg01no363_a08.b1 PHD_FILE: MSMg01no363_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:36 2005CHROMAT_FILE: MSMg01no363_a08.g1 PHD_FILE: MSMg01no363_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAG
GCAGGCGGATTTCTGAGTTCGAGGCCAGTCTGGTCTACAAAGTGAGTGCC
AGGTCAGCCAGGGCTACACAGAGAACCCCTGTCTCGAAAAAGCAAAAAAA
AAATAAAAAAAAAAAAGAATTCTCACCTGAGAAATACCGAATGGCTGAGA
AGCACCTGAAATTAATGTTCAGCATCTTTAATCATCAGGGAAATGCAAAT
CAAAGCAACCCTGAGATTCCACCTCACACCAATCAGAATGGCTAAGATCA
AAACTTCAGGTGACAGAAGATGCTGGCGAGGATGTGGAGAAAGAAACACT
CCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACAGAAGGATCCCACA
ATACCTCTCCTGAGCATATATCCAGAAGGTGTTCCAACCAGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAAACCAGATGCCCCTCAACAGAGGAATGGATACTGAAAATGTGG
TACATTTATAAATGGTAGTACTACCCTCTTTTTAAAAAAAAGAATTCTTT
GAATCCCCATGCCAAGGGATGGATTCTGGGGGCTTCTTCCTCTAATGTAG
TAAATCAATACAC
NNCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTATAAATTGGAGTTG
GCTGGGTGGAGTATTTGTGTTTTCTTTCAATTTGTTTTTATATACTCGTT
CATTTTATAGCATTATCTACAAACTGTGTGCGTAGATGTGTTGATTTTCT
ATGGAGCATGAATGAGGTTGCATGTATTTTCCTGTCCTTCTTTTTTTTTT
ATTGAGGGTTGTTTTCTTTTTGAAATTATTTATTTCTCTACAACAGGAGA
GTTATTTTGAATGTGGGGGTTTTATTATGCTGAAGAGCAGTTTTGTCCAA
AAAGAACATCATCTCCTGCGGAGAAAGGGCAGCTCTGAGCCTCGGGAGGT
AAGCAAAGGGTCCAAGTTTTTACAAGCAGAATCGGGAAGCTCTCGAAGGT
TCGTCTCCAGCTTCATAGGAGTTAAAAACTGCAGGGCAGAGATGGAGAGG
AGAGTCCTGGGCTGTGAATCTGCCTGGACTCCTGGGTGTGCAGAGTGTTT
GTGGTTGCGGGTTTTTCAGGGCTCATCGTCTGCGCTGGGTTGAGCTTTGT
TGATGAGGCTGCTGCTTGCAGTCATCCCTGTTTCCTTGAGGAACTCCTCC
CTTTGTCTGGATAACATCCCCAATCAAAAACCCGCTTGGTTTCTATAGGC
CGTCTTGGGCCCTGCCCTTGGCTTCTTTTTCTGGCGCCTATCTAACTGCT
ACCACCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_a08.g1 MSMg01no363_a08.g1 CHROMAT_FILE:
MSMg01no363_a08.g1 PHD_FILE: MSMg01no363_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:36 2005
         (284 letters)



>mm_chr3_33769728_33770410
          Length = 683

 Score =  474 bits (245), Expect = e-138
 Identities = 274/289 (94%), Gaps = 11/289 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtataaattggagttggctgggtggagtatttgtgttttctttcaatttgtttttat 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agggtatgaattggagttggctgggtggagtatttgtgttttctttcaatttgtttttat 424

                                                                       
Query: 61  atactcgttcattttatagcattatctacaaactgtgtgcgtagatgtgttgattttcta 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atactcgttaattttatagcattatctacaaactgtgtgcgtagatgtgttgattttcta 364

                                                                       
Query: 121 tggagcatgaatgaggttgcatgtattttcctgtccttcttttttttttattgagggttg 180
           |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 363 tggagcatgaatgaggttgcgtgtattttcctgtcctt-ttttttttttattgagggttg 305

                                                                       
Query: 181 ttttctttttgaaattatttatttctctacaacaggagagttattttgaatgtgggggtt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 304 ttttctttttgaaattatttatttctctacaacaggagagttattttgaatgtgggg--- 248

                                                            
Query: 241 ttatta-----tgctgaagagcagttttgtccaaaaagaacatcatctc 284
             || |     ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 --atcagaggatgctgaagagcagttttgtccaaaaagaacatcatctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)