Query= MSMg01no363_h14.b1 MSMg01no363_h14.b1 CHROMAT_FILE:
MSMg01no363_h14.b1 PHD_FILE: MSMg01no363_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:12 2005
(657 letters)
>mm_chr3_59092071_59093127
Length = 1057
Score = 1193 bits (617), Expect = 0.0
Identities = 641/653 (98%), Gaps = 7/653 (1%)
Strand = Plus / Plus
Query: 5 gaattctttacttttactgttttcactaagtgtcacttaggaacataacactacagtcat 64
|||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctttaattttaatattttcactaagtgtcacttaggaacataacagtacagtcat 264
Query: 65 gaactcaggaagaggaaacaactgactcagtacggaatatgtaaatccttccatgatgtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaactcaggaagaggaaacaactgactcagtacggaatatgtaaatccttccatgatgtc 324
Query: 125 ctttggtagaaggcatgtacatggaatttgattttaattattagtatattgtgtttctac 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 325 ctttggtagaaggcatgtacatggaatttggttttaattattagtatattgtgtttctac 384
Query: 185 tgaatggtaacattggcataaaacagttgatctgtgccaagatctcgcctagaggaaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaatggtaacattggcataaaacagttgatctgtgccaagatctcgcctagaggaaaat 444
Query: 245 gaacatagcatatttgttaatgggaaagggcaaaagatatggatattgtgcaaagaaata 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 gaacatagcatatttgttaatggg-------aaaagatatggatattgtgcaaagaaata 497
Query: 305 aaacactgttatgaaggtggctgttggaaccaagcaaatatagtgatgtatgcactggca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaacactgttatgaaggtggctgttggaaccaagcaaatatagtgatgtatgcactggca 557
Query: 365 cctaaaattgatcatttttgctgggaaattcctctcatacatccctatctctaggaaagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cctaaaattgatcatttttgctgggaaattcctctcatacatccctatctctaggaaagc 617
Query: 425 caagctctggtgttctttcttgtgtctgtctctagaacgtgggatgcttgtagaagcttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caagctctggtgttctttcttgtgtctgtctctagaacgtgggatgcttgtagaagcttg 677
Query: 485 cctgtcttcgtcatcactgtctcctggaacacaggtctaaaatgattaaggaaggaaatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cctgtcttcgtcatcactgtctcctggaacacaggtctaaaatgattaaggaaggaaatt 737
Query: 545 cacctgagagttagttgcctatttctcaattctattctgtcagtctgcaaacagtgatgg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cacctgagagttagttgcctatttctcaattctattctgtcagtctgcaaacagtgatgg 797
Query: 605 tactgtaaattcatatttgttgtttacggtggctggctgaatacatgatcagc 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tactgtaaattcatatttgttgtttacggtggctggctgaatacatgatcagc 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_h14.g1 MSMg01no363_h14.g1 CHROMAT_FILE:
MSMg01no363_h14.g1 PHD_FILE: MSMg01no363_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:12 2005
(535 letters)
>mm_chr3_59283670_59284606
Length = 937
Score = 872 bits (451), Expect = 0.0
Identities = 518/557 (92%), Gaps = 30/557 (5%)
Strand = Plus / Minus
Query: 1 cattacagcacaagtaattcccccacagttcctgatcaccacacagcaaggagtccttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 cattacagcacaagtaattcccccacagttcctgatcaccacacagcaaggagtccttgc 817
Query: 61 tgctcttgttttgtgaatgaataattaaatgaaattcttccacatctatggaaagcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tgctcttgttttgtgaatgaataattaaatgaaattcttccacatctatggaaagcattt 757
Query: 121 cttgatatttt-------------agtgaggttagccaaaaaaaaaatcaattcaaagga 167
||||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct: 756 cttgatattttagtgagacttttcagtgaggttagcc---aaataaatcaattcaaagga 700
Query: 168 cttattctgtctttaatatccaaatccctatctctgccatgaccctagttttaacagcaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cttattctgtctttaatatccaaatccctatctctgccatgaccctagttttaacagcaa 640
Query: 228 ttcacatatctgatg-----tttttctccttctatggtaaacaggtttattggcgacctg 282
||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 639 ttcacatatctgatgcaggc-----ctccttctatggtaaataggtttattggcgacctg 585
Query: 283 ctggatatacaaagctaagggcctgcatctggtaatgacctcctgattatcagagtccag 342
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 584 ctggatatacaaagctaagggcctgcatctggtaatgacctcctggttatcagagtccag 525
Query: 343 gcagtcatcacacaacaagagaggaggaaggtatgg----ttatgtgtgtctgtgtagct 398
||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||
Sbjct: 524 gcagtcatcacacaacaagagagaaggaagatatggttatttatgtgtgtctgtctagct 465
Query: 399 agactctccctctcatgtaaggacaccaggattcagtcatggagttccattttagtgaga 458
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 464 agactctccctctcatgtaaggacaccaagattcagtcatggagctccattttagtgaga 405
Query: 459 cattctttctgaatcctttccaaagtccacatgtccgatgttcatagtgaaaaaatattt 518
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 404 cattctttctgaatcctttccaaagtccacatgtccgatgttcatagtcaaaaaatattt 345
Query: 519 ccaaatctaaaggattc 535
|||||||||||||||||
Sbjct: 344 ccaaatctaaaggattc 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 937
Length adjustment: 10
Effective length of query: 525
Effective length of database: 927
Effective search space: 486675
Effective search space used: 486675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
