BAC Information

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BAC

Clone NameMSMg01-363P24
Chromosome3 (Build37)
Map Location 46,418,949 - 46,419,434
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433580, LOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363P24.T7 (MSMg01no363_p24.b1)MSMg01-363P24.TJ (MSMg01no363_p24.g1)
ACCAG472302AG472303
length1,289760
length of high quality
(start - end)		---492 (79 - 570)
definitionCHROMAT_FILE: MSMg01no363_p24.b1 PHD_FILE: MSMg01no363_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:55 2005CHROMAT_FILE: MSMg01no363_p24.g1 PHD_FILE: MSMg01no363_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGGTGTGGGTCGCGGTCTGAAGATGGTCACCGAGGCCTTTCTAAAAAT
AACAACGAGGCAGAGTGCGTGCGTCCATGTCACTCACCGCACCACTGGAC
GGACTAGCCGATACCTTGCGCGATGTGTGAACACACACAGACAAATGGTT
CACGATGCATGTCGAATAACGATCACTAGAGACTAGCACGCGTCGAGTTA
CTCCCGAACACCGCCCACCTTGCCCACACTTACCTCCCGATGTTCGGCGG
CCGACGAGCTCATAGTCCGTCTCGCTGCGGACGCGCCTATAACAACTCGA
ACTGCCCACCAATACAAAATTGCCGACTCCCAGCATGGCTTCCAACCATT
AGTATATTTCTATATAACCGACGTTGCATATACAGGCCCTTGTTCTCTTG
ACCACTATTCCCCTACTCTTCATGCCAATCTCACCCTCTCGAACCATATT
AGATTCCACCACACGCGCCATTCGACGCTCATATATATTCGCCGTCACCC
CGCCGCATTGTTGACCGTTGCAGCTATCTCGCGACTTGAACTTTGTGAAC
GACGTTACGCGCCTCGCAAAGCTCCGCTTGCCTTCATAGCTATTTAGGAC
TTTTAGTCCTATATACTCTCGTTCTCTTATCTACCCCGCTTCGCCTCACA
TCTGTACGCGCACTTCGTCCTGTTGCAGGTCGAGACGCCGCGCCACAATG
ATATAATAAAGGTCATGCAAGTGGATCGGCGCGCAGTATAAATAACGCGC
ATTCCGAATCGCGCGAGCATAGAACACGTTCGCTGCGGATGATAGACTAA
GCTCCGGAACCGCGATGTGGCATACTGATGATCNCCGGAGGAGGAGCGTG
CGCGCGATCAGANTGTAGAAGAGATGGGACNTGAACCGACGAAATGAACG
CGCCGAGCACGGTCACCTAGGATGACTGTGATGGATGTAAGTGAATACGA
GCGCCGAGGACATCCTGCACCTAGTAGTGCCAGCNTAGCAGCAGAGTCGA
GCAGGTATGGTGAGTACGCGTGCAATCTGACGGGCGGAGACGTCATTGGA
TAACATGACAGACAGATGTCTTTATGAGGTACAGATTNTAGTACGACCGG
ATCTGTGTGACGCGGGAATGTATCCTGACACGCGACGACGCTACACTCAG
ACTGTGTCTGATTGACGCGATANTGATTGCTTGATCAGCTGNTNCCGTTG
GCGCTGTACTTGGCGTGTATGTCTCATAGGTAGATGCTGTTGTGATCCAC
GACGTGGGCGGATCGTTCGTTATGCGGTTATACTGAGCN

NAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCATTCACTTAATTTTAGGT
ATTAAGGAAAGACAGTGGATAAATAAGGAAAAATCAAACTTTTAGGAGAA
TGCTGGTTTTTCTTCATTTTCTTTCCCTGCTATAGCACTGGCTTGCCACT
GATGTAGTACAGGCCTTTTTCTAAATAGGGACCACATGTTTGTGGAACAC
CCATGCTGTACTCATGGACCACAGGTGATAACAACATTCATTGAAGTGTT
TTTCTACTCAGAAGCCACATGTACCTTCTCTCCACTTGATATGAATGGAA
GGAGAACAGAAAATTAAAAGAATGAATTCAAGGATCATGGAGCAGACAGA
ATATTAACCTGCCTCTAGCCGGGGCAGTGTAACCTCTAAGTCTTACTCTG
AAGTGAGCAAAGATCCTATCCTTGGGGGGGGGGGGGGAAAGGTGCAAAGA
ATGAATTTCTGGANAGCCTCTCACCTTCTGTGAAGCATTGTTTCTTAAAT
TACCCCCTGTTCTTTGAATTAGCATTTAAAGACTTCCAAGTAAGCTTTTG
AATGCATGTGCCCCTGAAGTTGTCCCTCTCCCAAAGGATTTAAAGCTTTT
GCTACCTTGTTCTGGAACTGGATAAACAATTCTCTCAATCTCCTCCGTAA
TTTTCAGAGGAGTTTATATTTCCTAACCTAAAATGTTTTTCCAAGTAAAA
TCCTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_p24.g1 MSMg01no363_p24.g1 CHROMAT_FILE:
MSMg01no363_p24.g1 PHD_FILE: MSMg01no363_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:55 2005
         (492 letters)



>mm_chr3_46418749_46419640
          Length = 892

 Score =  832 bits (430), Expect = 0.0
 Identities = 474/493 (96%), Gaps = 8/493 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcattcacttaattttaggtattaaggaaagacagtggataaataaggaaaaatcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcattcacttaattttaggtattaaggaaagacagtggataaataaggaaaaatcaaa 260

                                                                       
Query: 61  cttttaggagaatgctggtttttcttcattttctttccctgctatagcactggcttgcca 120
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttaggaaaatgctagtttttcttcattttctttccctgctatagcactggcttgcca 320

                                                                       
Query: 121 ctgatgtagtacaggcctttttctaaatagggaccacatgtttgtggaacacccatgctg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatggagtacaggcctttttctaaatagggaccacatgtttgtggaacacccatgctg 380

                                                                       
Query: 181 tactcatggaccacaggtgataacaacattcattgaagtgtttttctactcagaagccac 240
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tactcctggaccacaggtgataacaacattcattgaaatgtttttctactcagaagccac 440

                                                                       
Query: 241 atgtaccttctctccacttgatatgaatggaaggagaacagaaaattaaaagaatgaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtaccttctctccacttgatatgaatggaaggagaacagaaaattaaaagaatgaatt 500

                                                                       
Query: 301 caaggatcatggagcagacagaatattaacctgcctctagccggggcagtgtaacctcta 360
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 caaggatcatggggcagacagaatattaacctgcctctagccggggcagtgtaaccacta 560

                                                                       
Query: 361 agtcttactctgaagtgagcaaagatcctatccttggggggggggggggaaaggtgca-a 419
           ||||||||||||||||||||||||||||||||||||||||||       ||||||||| |
Sbjct: 561 agtcttactctgaagtgagcaaagatcctatccttggggggg-------aaaggtgcaca 613

                                                                       
Query: 420 agaatgaatttctgganagcctctcaccttctgtgaagcattgtttcttaaattaccccc 479
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 614 agaatgaatttctggaaagcctctcaccttctgtgaagcattgtttcttaaattacccca 673

                        
Query: 480 tgttctttgaatt 492
           | ||||| |||||
Sbjct: 674 tcttcttagaatt 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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