Query= MSMg01no364_l20.b1 MSMg01no364_l20.b1 CHROMAT_FILE:
MSMg01no364_l20.b1 PHD_FILE: MSMg01no364_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:58 2005
(434 letters)
>mm_chr3_69147855_69148688
Length = 834
Score = 493 bits (255), Expect = e-144
Identities = 396/461 (85%), Gaps = 48/461 (10%)
Strand = Plus / Plus
Query: 6 gaattcaccagatttcttaatggtggttcaatccctagcatgtcagtttcttttcctaaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaccagatttcttaatggtggttcaatccctagcatgtcagtttcttttcctaaa 265
Query: 66 atttcctttagtagctttcatttcagtcttattgtacagttttaagttttgttttatcat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atttcctttagtagctttcatttcagtcttattgtacagttttaagttttgttttatcat 325
Query: 126 caatccattaatcaatccctcccactgatctatccatccattattcatccacccatcatc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caatccattaatcaatccctcccactgatctatccatccattattcatccacccatcatc 385
Query: 186 cattcatccatccat-catccat---tcatcc---catctatccat-----catccatca 233
|||||||| |||||| ||||||| |||||| |||| |||||| |||||||||
Sbjct: 386 cattcatc-atccattcatccatccatcatccattcatc-atccattcatccatccatca 443
Query: 234 cccattta---acccatccatttatctatccatt-atccatctatccatcgatcatcatc 289
||||| | ||||| |||| ||||| ||||| | | ||||| || |||||
Sbjct: 444 tccattcatccaccca-ccat--------ccattcatccaccca-ccatccat--tcatc 491
Query: 290 catccattatccatccatccatccatccatccatccattatcca---a-ccatccatcat 345
|| |||| |||||| |||||| ||||| |||||| ||| ||||| | |||||||||||
Sbjct: 492 cacccatcatccattcatccacccatc-atccattcatcatccattcatccatccatcat 550
Query: 346 ctat--at--ac--atcagccattcatcc-----t-atccatccatcatccatccatcca 393
| || || || |||| |||||||||| | ||||||||||||||||| ||||||
Sbjct: 551 ccattcatccacccatcatccattcatccacccatcatccatccatcatccattcatcca 610
Query: 394 tccatccatccatccatccatccatccatccatcatccatt 434
|||||| |||||| ||||||| |||||| ||||||||||||
Sbjct: 611 tccatc-atccattcatccattcatccacccatcatccatt 650
Score = 188 bits (97), Expect = 7e-52
Identities = 238/297 (80%), Gaps = 44/297 (14%)
Strand = Plus / Plus
Query: 157 atccatccat--t--attcatccacccatcatccattcatccatccatcatccat---tc 209
|||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 538 atccatccatcatccattcatccacccatcatccattcatccacccatcatccatccatc 597
Query: 210 atcc---catctatccatcatccat-cacccatttaacccatccatttatctatccatt- 264
|||| |||| ||||||||||||| || ||||| |||||| ||| |||||||
Sbjct: 598 atccattcatccatccatcatccattcatccatt-----catccacccatc-atccattc 651
Query: 265 atccatctatccatcgatc-at-catccatccattatccatccatccatccatccatcca 322
||||| | ||||| ||| || |||||| |||| ||||||| |||||| ||||| |
Sbjct: 652 atcca-c---ccatc-atccattcatccacccat----catccattcatccacccatc-a 701
Query: 323 tccatt-atccaaccatccatcatctatatacatc-agccattcatcc-t--atccatcc 377
|||||| ||||| || ||||||| || | |||| | |||| ||||| | ||||| ||
Sbjct: 702 tccattcatcca-cc---catcatccat-t-catccacccat-catccattcatccaccc 754
Query: 378 atcatccatccatccatccatccatccatccatccatccatccatccatcatccatt 434
||||||||| |||||| ||||| ||||||||||||||||||| |||||||| |||||
Sbjct: 755 atcatccattcatccacccatc-atccatccatccatccatc-atccatcacccatt 809
Score = 149 bits (77), Expect = 3e-40
Identities = 90/97 (92%), Gaps = 5/97 (5%)
Strand = Plus / Plus
Query: 168 attcatccacccatcatccattcatccatccatcatccattcatcccatctatccatcat 227
|||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 743 attcatccacccatcatccattcatccacccatcatccat-----ccatccatccatcat 797
Query: 228 ccatcacccatttaacccatccatttatctatccatt 264
|||||||||||||||||||||||||||||||||||||
Sbjct: 798 ccatcacccatttaacccatccatttatctatccatt 834
Score = 118 bits (61), Expect = 7e-31
Identities = 120/149 (80%), Gaps = 22/149 (14%)
Strand = Plus / Plus
Query: 168 attcatccacccatcatccattcatccatccatcatccattcatcc---catctatccat 224
|||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct: 686 attcatccacccatcatccattcatccacccatcatccattcatccacccatc-atccat 744
Query: 225 -catccatcacccatttaacccatccatttatctatccattatccatctatccatcgatc 283
|||||| ||||| |||||||| ||| | |||| ||||||| ||||||| |
Sbjct: 745 tcatcca---cccat------catccattcatccacccatcatccatccatccatc---c 792
Query: 284 atcatccatc---catt--atccatccat 307
|||||||||| |||| | ||||||||
Sbjct: 793 atcatccatcacccatttaacccatccat 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 6
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no364_l20.g1 MSMg01no364_l20.g1 CHROMAT_FILE:
MSMg01no364_l20.g1 PHD_FILE: MSMg01no364_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:58 2005
(371 letters)
>mm_chr3_69276325_69277095
Length = 771
Score = 717 bits (371), Expect = 0.0
Identities = 371/371 (100%)
Strand = Plus / Minus
Query: 1 ctggacgcacagtgtgctgtggataatctctttgcccaggtatccaggagaagggagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctggacgcacagtgtgctgtggataatctctttgcccaggtatccaggagaagggagaga 512
Query: 61 gagatacaggcaagataggagaggggggcttcaaaaggacagaggcctatcctacgccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gagatacaggcaagataggagaggggggcttcaaaaggacagaggcctatcctacgccct 452
Query: 121 gcactgaaagaacgtctgagtctgtcctagaaaagcccagagaacaagaacggaaggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gcactgaaagaacgtctgagtctgtcctagaaaagcccagagaacaagaacggaaggaga 392
Query: 181 gctggaggtgaggtgactgctgggctggcctgcccacccagaattatctggccaaggacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gctggaggtgaggtgactgctgggctggcctgcccacccagaattatctggccaaggacc 332
Query: 241 acagggtgtcctgtgggtagaggcaggccaccagagggaaggagctgtttggatgcctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acagggtgtcctgtgggtagaggcaggccaccagagggaaggagctgtttggatgcctca 272
Query: 301 tagaagctgctcaaggggacagcctagacctcatcacagagtctctgtgggactaacagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tagaagctgctcaaggggacagcctagacctcatcacagagtctctgtgggactaacagc 212
Query: 361 caacaatccat 371
|||||||||||
Sbjct: 211 caacaatccat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
