Query= MSMg01no365_d19.b1 MSMg01no365_d19.b1 CHROMAT_FILE:
MSMg01no365_d19.b1 PHD_FILE: MSMg01no365_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:41 2005
(182 letters)
>mm_chr3_115773261_115773842
Length = 582
Score = 325 bits (168), Expect = 1e-93
Identities = 177/182 (97%), Gaps = 4/182 (2%)
Strand = Plus / Minus
Query: 5 gaattcatgtgttctcctctgtgtccagtaggcactctttccttgagtcatgcactatct 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaattcatgtgtgctcctctgtgtccagtaggcactctttccttgagtcatgcactatct 267
Query: 65 ctgctttacactctttctccccttcttcctcaatgttctctgtgccttggaaaggggttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgctttacactctttctccccttcttcctcaatgttctctgtgccttggaaaggggttt 207
Query: 125 gttatgtatgtgaatgtctatgtgtatg----tgtgtattatgttatgtatatgtgtgtg 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 206 gttatgtatgtgaatgtctatgtgtatgtgtatgtgtattatgttatgtatatgtgtgtg 147
Query: 181 ta 182
||
Sbjct: 146 ta 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space: 99876
Effective search space used: 99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no365_d19.g1 MSMg01no365_d19.g1 CHROMAT_FILE:
MSMg01no365_d19.g1 PHD_FILE: MSMg01no365_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:41 2005
(597 letters)
>mm_chr3_115634794_115635790
Length = 997
Score = 1147 bits (593), Expect = 0.0
Identities = 596/597 (99%)
Strand = Plus / Plus
Query: 1 cttctctctgtccctttgcccgttgccctaactgttggaaaccagtgatctattcttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctctctgtccctttgcccgttgccctaactgttggaaaccagtgatctattcttctt 260
Query: 61 caagagctttgcctttttgagaaggtcaaaaatatgagactggcttccataagctcggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagagctttgcctttttgagaaggtcaaaaatatgagactggcttccataagctcggtg 320
Query: 121 ttctggatattcatgcagactgtcccaggtatcaagagtgtgtcccttttttactggtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctggatattcatgcagactgtcccaggtatcaagagtgtgtcccttttttactggtta 380
Query: 181 gtagaggtctccgcatggagagactgcagtagtcatgataattgctaaagcattcacatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagaggtctccgcatggagagactgcagtagtcatgataattgctaaagcattcacatc 440
Query: 241 gaagcttttgtgtggttgttctagaagagatacccaagaatgggatttctggttcagatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagcttttgtgtggttgttctagaagagatacccaagaatgggatttctggttcagatg 500
Query: 301 atagtaatacatttacttctgaaggaaactacctgtttactggcctagcgagatatgttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagtaatacatttacttctgaaggaaactacctgtttactggcctagcgagatatgttt 560
Query: 361 gttggtgcaatagtgacatgaatattatagggataaccaatcactttctgactggattta 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 gttggtgcaatagtgacatgaatattatagggctaaccaatcactttctgactggattta 620
Query: 421 aggcctgctccacaggagaaaccgatctggagagctcatacatcccaggagtgaatctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcctgctccacaggagaaaccgatctggagagctcatacatcccaggagtgaatctgc 680
Query: 481 cactatttgctaaataggtacaatatcaaagtacattctaagtagctatttctataccca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cactatttgctaaataggtacaatatcaaagtacattctaagtagctatttctataccca 740
Query: 541 caggcaagtgtaactctcaggtctcctcagacaaaagtccttgtgtagtgcatggtt 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggcaagtgtaactctcaggtctcctcagacaaaagtccttgtgtagtgcatggtt 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
