Query= MSMg01no365_i08.b1 MSMg01no365_i08.b1 CHROMAT_FILE:
MSMg01no365_i08.b1 PHD_FILE: MSMg01no365_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:02 2005
(522 letters)
>mm_chr3_97560845_97561768
Length = 924
Score = 932 bits (482), Expect = 0.0
Identities = 511/522 (97%), Gaps = 4/522 (0%)
Strand = Plus / Minus
Query: 1 gagaaactgaatgacctgagctgtgagctgaaatctgcacaggagtcatctcagaagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gagaaactgaatgacctgagctgtgagctgaaatctgcacaggagtcatctcagaagcaa 662
Query: 61 gatacgacaatccagagcctcaaggaaatgctaaaaagcagggaaagtgaggtgagaggc 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 661 gatacgacaatccagagcctcaaggaaatgcttaaaagcagggaaagtgaggtgagaggc 602
Query: 121 tacgtggtcacagacctgtggggagacgggtcactctggtgacgtagataagtgctctct 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 601 tacgtggtcacagacctgtggggagacgggtcacgctggtgacgtagataagtgctctct 542
Query: 181 atttgtagatgtcactgttgtcaggccagcaaatctttctatgggaaattgtccgctaag 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atttgtagatgtcactattgtcaggccagcaaatctttctatgggaaattgtccgctaag 482
Query: 241 taggtgctttgttaaagctcctgtccctaacatctgcacaggagag---aggactttccg 297
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 481 taggtgctttg-gaaagctcctgtccctaacatctgcacaggagagagaaggactttccg 423
Query: 298 agtcgttggctaaccttagcacgctatcctcctcctctcatttccagactgaggagctgt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agtcgttggctaaccttagcacgctatcctcctcctctcatttccagactgaggagctgt 363
Query: 358 accaggtgatcgaaggacaaaatgacacaatggcaaagcttcgggaaatgctgcaccaga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 accaggtgatcgaaggacaaaatgacacaatggcaaagcttcgggaaatgctgcaccaga 303
Query: 418 gccagctcggacagctccacgtacgtgagggtcacaggcaggaatggggccgccatggct 477
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 302 gccagctcggacagctccacgtacgtgagggccacaggcaggaatggggccgccctggct 243
Query: 478 gcccgggtctcccgggggctccgcgcttccctccctgtgact 519
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 242 gcccgggtctcccgggggctccgtgcttccctccctgtgact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 924
Length adjustment: 10
Effective length of query: 512
Effective length of database: 914
Effective search space: 467968
Effective search space used: 467968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_i08.g1 MSMg01no365_i08.g1 CHROMAT_FILE:
MSMg01no365_i08.g1 PHD_FILE: MSMg01no365_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:03 2005
(522 letters)
>mm_chr3_97384361_97385282
Length = 922
Score = 901 bits (466), Expect = 0.0
Identities = 506/522 (96%), Gaps = 6/522 (1%)
Strand = Plus / Plus
Query: 1 cacacccctaaaccccttaccccataaaaacccctagctttcgagcctcgtggccgacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cacacccctaaaccccttaccccataaaaacccctagctttcgagcctcgtggccaacat 260
Query: 61 tcgttatctcctgtgtgggatgcatgtcggtccggagctccgtcattaaacgacctcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tcgttatctcctgtgtgggatgcatgtcggtccggagctccgtcattaaactacctcctg 320
Query: 121 taattacatcaaggccttttcgtgattctttgggtgcgcgccagattgggaattgagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattacatcaaggccttttcgtgattctttgggtgcgcgccagattgggaattgagtgg 380
Query: 181 gggtttccccactaggttctatcactacgaaggacaaaagcacactctgagaaagacccg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gggtttccccactaggttctatcactacgaaggacaaaagcacactctgagaaagacctg 440
Query: 241 cctccgtaacagactgccgggaagaccagagtgccatgagaggcctgagagacccacacc 300
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctgtaacagactgccaggaagaccagagtgccatgagaggcctgagagacccacacc 500
Query: 301 tcccaccccgcacacaagtcaacacagaatggatcgcacaccataagacctggattccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccaccccgcacacaagtcaacacagaatggatcgcacaccataagacctggattccaa 560
Query: 361 ctcacttccttcctctggttctaggttttctcctgctgctgctgctgctgctgctgcagg 420
|||||||||||||||||||||||| || ||||| |||||||||||||||| | ||
Sbjct: 561 ttcacttccttcctctggttctaggcttcctcctcctgctgctgctgctgc-g-----gg 614
Query: 421 cagagcatcaggggtccactggccatctttggtttctcccaggatagacttcaggtctat 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 615 cagagcatcaggggtccactggccatctttggtttctcccaggatggacttcaggtctat 674
Query: 481 atcctccatggagctcccctcagaggacagcagtttatccaa 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atcctccatggagctcccctcagaggacagcagtttatccaa 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
