BAC Information

Click to search

BAC

Clone NameMSMg01-365I12
Chromosome3 (Build37)
Map Location 89,120,428 - 89,268,882
singlet/doubletdoublet
Overlap geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk
Upstream geneCct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1
Downstream geneKcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365I12.T7 (MSMg01no365_i12.b1)MSMg01-365I12.TJ (MSMg01no365_i12.g1)
ACCAG473464AG473465
length762732
length of high quality
(start - end)
184 (59 - 242)271 (313 - 583)
definitionCHROMAT_FILE: MSMg01no365_i12.b1 PHD_FILE: MSMg01no365_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:03 2005CHROMAT_FILE: MSMg01no365_i12.g1 PHD_FILE: MSMg01no365_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,120,428 - 89,120,611)(89,268,613 - 89,268,882)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXATACAAGAGXXXXXXXXXXXXXXXX
XXXXXXCCCGAGAAGGCGCTGTAACGCTGGAACTTCTCGGAGAACTTGAT
GGGGCTGTGCGAGGCGTGCTGCCGGTTGCATTCCCAGCGCTTGGAGCCTT
GGCTGGCGTTGCAGGTGCGGTAGCCGCTCAGGTTCACCATGTACAGCACG
TACTGCTCCGCCCCGCCGCCAGGCCCTGAGCTGTTGTAGTGCGGACAGCA
AATATCCAGATAGTCGTTCACGTTCACCTGCACGGTGTATTCCTCTCGCC
GCACGTTGTTTTATTTAATGAAGTGGGTCAGAGAAGAAACTCCAATGCTC
CAAGGCTTTCCATGTCAACACCCTGTCAACACCCCGCGTACCTTCATTAT
AACCCCACACATATTTTTTGATCATAACACTTCAGTCCCCTCATTCTCTT
GGCTTTTTCTACAATCTTTTCTTATTCCATTTCTGTGCCTGTTTTCTAGC
GCGCCAGTCCTCTGTGTCCCCCCCTTTTGTTTCTGTCCCTCTCTTGTTGC
CCACCCTACCGTATTCAATTCTCCCATTAACCTGTTCTTACTCCTTAATG
AACCCTTTTTTCCGCCTTATTGTTTTTCCTTCCTATCGTTTCTCACTTTC
CCCCCTCCCCCCTTTCACTCCCTTTCTTTTTTCTTCTTTTTTTTACTTTC
TTTTCCTTTACTTCCTTTCTATATCCATCCTTTCCTTTTTCGTTCTTCCT
TATTCCCCCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGGATAGCCAGAGCTATACAGAGAAACCCTGTCTTGAATAAC
TCCCAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAGACAATG
GTGTATATCAAGGAAGGCTTCCCAATGGAGGTGACATGAAAAGTGTCAGA
GTAAATCAGGTAAAAAGGTCAGGAAGGGGCAGCTGGGCAGGAAAAAGACA
CGCAAAGGCATGATCTACTAGGTGTGGTGGTACACACAGTTAATTCAGGC
TTTTGTTAGGCAGAGGCAGGTGGATCTCTGTGAGTGTCTGGGGCCATCCT
AGTCTACAAAGTAGCTGGCCCTGACAACATAGTAAAACATTGTCTAAATA
AATAAATAATAAAACAGAGAGAAAAGAAAACAGAAGGGAAGGCAAGAAGG
AAAAAAAGCAAAGTCACAAGTACATAACTGATGTAAGAGACGCTGGTGGC
TACAGCTCTGTTAGGATGGAGAGGAACTGGGGAGCGCCAACATTCACATC
ANAACTCGGACTTTACTTGTGTTGGGGGGGGGCGGTTACGAGCACATTCT
CCACATTCCACTGATACACTTTTTACTTTTTAGTCACCCTGGCTTACTTT
TTAAGCACCCTGGTTTCTGGCCAAAAAGGCCTAAAAAGGCAGGAGGAATT
TTGAAATGCTAAAAAGTGGGGCGGAAAGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_i12.b1 MSMg01no365_i12.b1 CHROMAT_FILE:
MSMg01no365_i12.b1 PHD_FILE: MSMg01no365_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:03 2005
         (184 letters)



>mm_chr3_89120228_89120811
          Length = 584

 Score =  356 bits (184), Expect = e-103
 Identities = 184/184 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgagaaggcgctgtaacgctggaacttctcggagaacttgatggggctgtgcgaggcgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgagaaggcgctgtaacgctggaacttctcggagaacttgatggggctgtgcgaggcgtg 260

                                                                       
Query: 61  ctgccggttgcattcccagcgcttggagccttggctggcgttgcaggtgcggtagccgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccggttgcattcccagcgcttggagccttggctggcgttgcaggtgcggtagccgct 320

                                                                       
Query: 121 caggttcaccatgtacagcacgtactgctccgccccgccgccaggccctgagctgttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggttcaccatgtacagcacgtactgctccgccccgccgccaggccctgagctgttgta 380

               
Query: 181 gtgc 184
           ||||
Sbjct: 381 gtgc 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no365_i12.g1 MSMg01no365_i12.g1 CHROMAT_FILE:
MSMg01no365_i12.g1 PHD_FILE: MSMg01no365_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:03 2005
         (271 letters)



>mm_chr3_89268319_89268989
          Length = 671

 Score =  501 bits (259), Expect = e-146
 Identities = 267/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggcaggtggatctctgtgagtgtctggggccatcctagtctacaaagtagctggccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaggcaggtggatctctgtgagtgtctggggccatcctagtctacaaagtagctggccct 505

                                                                       
Query: 61  gacaacatagtaaaacattgtctaaataaataaataataaaacagagagaaaagaaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacaacatagtaaaacattgtctaaataaataaataataaaacagagagaaaagaaaaca 445

                                                                       
Query: 121 gaagggaaggcaagaaggaaaaaaagcaaagtcacaagtacataactgatgtaagagacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaagggaaggcaagaaggaaaaaaagcaaagtcacaagtacataactgatgtaagagacg 385

                                                                       
Query: 181 ctggtggctacagctctgttaggatggagaggaactggggagcgccaacattcacatcan 240
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 384 ctggcggctacagctctgttaggatggagaggaactcgggagcgccaacattcacatcaa 325

                                         
Query: 241 aactcggactttacttgtgttggggggggg 270
           ||||||||||||||||||||||||||||||
Sbjct: 324 aactcggactttacttgtgttggggggggg 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)