Query= MSMg01no366_a17.b1 MSMg01no366_a17.b1 CHROMAT_FILE:
MSMg01no366_a17.b1 PHD_FILE: MSMg01no366_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:45 2005
(503 letters)
>mm_chr3_80395511_80396413
Length = 903
Score = 951 bits (492), Expect = 0.0
Identities = 498/500 (99%)
Strand = Plus / Minus
Query: 4 ggaattctacatctgatcttacatagaaatctcatccaaatggcaggtacatggaatata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ggaattctacatctgatcttacatagaaatctcatccaaatggcaggtacatggaatata 644
Query: 64 attctgtaaagttacttttggacatgggtataagttaaaaatgagtcactaattaattac 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 attctgtaaagttacttttggacatgggtataagttaaaaatgagtcactaattaattat 584
Query: 124 gcatttggatttcagttcaatttctaaaactgatgcttgctcatatatccaccaaacctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gcatttggatttcagttcaatttctaaaactgatgcttgctcatatatccaccaaacctt 524
Query: 184 taaaacgtcttggaatgtatatagtttaataattttggatatcagggaagaggttgtatt 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 taaaacgtcttggaatgtgtatagtttaataattttggatatcagggaagaggttgtatt 464
Query: 244 ttcagagatttaaatctcagttactagtgaggatgattatgccctctgagtttaagtgaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttcagagatttaaatctcagttactagtgaggatgattatgccctctgagtttaagtgaa 404
Query: 304 cttggcatttattactttgaatcattattgtgcattgatcttggttcattgagtgatttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cttggcatttattactttgaatcattattgtgcattgatcttggttcattgagtgatttc 344
Query: 364 ttctctttttgagagaaatgacctttggagtctttcaatcagaataagaaaaattttagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttctctttttgagagaaatgacctttggagtctttcaatcagaataagaaaaattttagt 284
Query: 424 aatgtgcaatgctttggttgtaggtttgtcatgaattatgttgtttagtataaaaaatgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aatgtgcaatgctttggttgtaggtttgtcatgaattatgttgtttagtataaaaaatgt 224
Query: 484 accatttacacatttctata 503
||||||||||||||||||||
Sbjct: 223 accatttacacatttctata 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_a17.g1 MSMg01no366_a17.g1 CHROMAT_FILE:
MSMg01no366_a17.g1 PHD_FILE: MSMg01no366_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:45 2005
(362 letters)
>mm_chr3_80210686_80211447
Length = 762
Score = 536 bits (277), Expect = e-156
Identities = 323/357 (90%), Gaps = 31/357 (8%)
Strand = Plus / Plus
Query: 5 gaggcatgaaaatttctactttcaatgagactcattatttaactctgaacatggtgtttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaggcatgaaaatttctactttcaatgagactcattatttaactctgaacatggtgtttg 264
Query: 65 gaatgtcaaataacaaaataaaatctacatacttctggccaatttttt-ctaattttatt 123
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 gaatgtcaaataacaaaataaaatctacatacttctggccaatttttttctaattttatt 324
Query: 124 aaaataaaacatgtgactccaaatctatgtcaacgggacctaaatttttcttttacacac 183
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 aaaataaaacatgtgactccaaatctatgtcaatgggacctaaatttttcttttacacac 384
Query: 184 acacacacacacacacacacacacacacacacacacacacacacacacacacacacacac 243
|||||||||||||||||||||||||||||| |
Sbjct: 385 acacacacacacacacacacacacacacac-c---------------------------- 415
Query: 244 accacaccacacatcttaaaatttactacattgtttgactagatgtgtgcatgtgactgt 303
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 -ccacactacacatcttaacatttactacattgtttgactagatgtgtgcatgtgactgt 474
Query: 304 gtgtttgtgagtgtaatgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtgtttgtgagtgtaatgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 531
Score = 91.6 bits (47), Expect = 7e-23
Identities = 136/185 (73%), Gaps = 42/185 (22%)
Strand = Plus / Minus
Query: 188 acacacacacacacacacacacacacacacacacacacacac-------acacacacaca 240
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct: 537 acacacacacacacacacacacacacacacacacacacacacgtgcattacactcacaaa 478
Query: 241 cacac---caca-ccacacatct--t--aa-aatttactacattgtttgactagatgtgt 291
||||| |||| ||||||||| | || ||| || || | |||| | ||||||||
Sbjct: 477 cacacagtcacatgcacacatctagtcaaacaatgtagta-aatgtt--a--agatgtgt 423
Query: 292 gcatgtgactgtgtgtttgtgagtgtaatgcacgtgtgtgtgtgtgtgtgtgtgtgtgtg 351
| ||||| | |||| |||||||||||||||||||||||||||
Sbjct: 422 -------a--gtgtg-----gggtgt-------gtgtgtgtgtgtgtgtgtgtgtgtgtg 384
Query: 352 tgtgt 356
|||||
Sbjct: 383 tgtgt 379
Score = 83.9 bits (43), Expect = 2e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 177 tacacacacacacacacacacacacacacacacacacacacac 219
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tacacacacacacacacacacacacacacacacacacacacac 496
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 191
Number of extensions: 74
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 11
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
