Query= MSMg01no367_a15.b1 MSMg01no367_a15.b1 CHROMAT_FILE:
MSMg01no367_a15.b1 PHD_FILE: MSMg01no367_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:04 2005
(535 letters)
>mm_chr3_122107702_122108642
Length = 941
Score = 998 bits (516), Expect = 0.0
Identities = 530/538 (98%), Gaps = 6/538 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttttcattgttatagcctcccccagtcctggttgttatcagtgtctagagctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaattcttttcattgttatagcctcccccagtcctggttgttatcagtgtctagagctg 682
Query: 64 gctcctccttgctcctaggaagatggggtctgacaccaaccaccccctccctgggcctct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcctccttgctcctaggaagatggggtctgacaccaaccaccccctccctgggcctct 622
Query: 124 cacagtgaagccttaggaccacccaggaatcagccccgctccaactatgttccttggggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacagtgaagccttaggaccacccaggaatcagccccgctccaactatgttccttggggg 562
Query: 184 agtggccctcctggttattggcaaagctaccagaaacttgacttcaaatcattcacgtct 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 agtggccctcctggttattggcaaagctaccagaaacttggcttcaaatcattcacgtct 502
Query: 244 aaacaggtggtccagagactctgacaggaacagtgagcttcaaaaggggaagagatagaa 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 aaacaggtggtccagagactctgacaggaactgtgagcttcaaaaggggaagagatagaa 442
Query: 304 tcacacaaacgccacgttttcagaccaccctgtgccccagaagccaggtcatcatcagtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacacaaacgccacgttttcagaccaccctgtgccccagaagccaggtcatcatcagtg 382
Query: 364 gggggacagcttgggtgggaggttgggcagtaatctgcttagccacccaccttgggaacg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggacagcttgggtgggaggttgggcagtaatctgcttagccacccaccttgggaacg 322
Query: 424 ctggggcatcccaacagggcttcaagaggacaagttacaaaccacctaaagagctcctct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggggcatcccaacagggcttcaagaggacaagttacaaaccacctaaagagctcctct 262
Query: 484 aggtgaa------aacagcccagggtggatagcaacacctccatgactctgggctgca 535
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgaaaagatgaacagcccagggtggatagcaacacctccatgactctgggctgca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 941
Length adjustment: 10
Effective length of query: 525
Effective length of database: 931
Effective search space: 488775
Effective search space used: 488775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_a15.g1 MSMg01no367_a15.g1 CHROMAT_FILE:
MSMg01no367_a15.g1 PHD_FILE: MSMg01no367_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:05 2005
(462 letters)
>mm_chr3_121920951_121921814
Length = 864
Score = 801 bits (414), Expect = 0.0
Identities = 451/464 (97%), Gaps = 2/464 (0%)
Strand = Plus / Plus
Query: 1 tatagacaatcctcacacagaaataaaacatgaacatgataactacacccccttgtaaag 60
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagacgatccccacacagaaataaaacatgaacatgataactacacccccttgtaaag 260
Query: 61 tggcttcaacctttctttccatattttattttactgtggggaggagtagaggatagatgt 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tggcttcaacctttctttccatattttatcttactgtggggaggagtagaggatagatgt 320
Query: 121 tcgccaagtgtgcataaggaagtcagaaggacagccttgtgcaatcgggtctctcctacc 180
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 321 gcgccaagtgtgcataaggaagtcagaaggacagccttgtgcagtcgggcctctcctacc 380
Query: 181 atctctatggggtactggggattaaagccaggatgttcatcgttgcagcaagtgttttca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 atctctatggggtactggggattaaagccaggatgttcatcgttgcagcaagagttttca 440
Query: 241 cctgcag--tcttttctccagctctgtaacttgtgttcctaaacttagatcctaacttta 298
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 cctgcagagtcttttctccagctctgtaactcgtgttcctaaacttagatcctaacttta 500
Query: 299 tgggatggcatctttagctccatcttgtatgaagaaataatgtgaacgctatctactacc 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tgggatggcatctttagctccatcttgtatgaagaaataatgtgaaccctatctactacc 560
Query: 359 ttaacactcccagcaataaagcaaaattcagagggcaagggtagatctttgtgtagtact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaacactcccagcaataaagcaaaattcagagggcaagggtagatctttgtgtagtact 620
Query: 419 gtagcagtgacaaccccctgtccccacatccagacacagacaga 462
||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 621 gtagcagcgacaaccccctgtccccacatccagacacggacaga 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 864
Length adjustment: 10
Effective length of query: 452
Effective length of database: 854
Effective search space: 386008
Effective search space used: 386008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
