BAC Information

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BAC

Clone NameMSMg01-367G09
Chromosome3 (Build37)
Map Location 157,161,798 - 157,162,288
singlet/doubletsinglet
Overlap genenone
Upstream gene4930570G19Rik, Negr1, LOC100041152, LOC668853, LOC546818
Downstream geneZranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367G09.T7 (MSMg01no367_g09.b1)MSMg01-367G09.TJ (MSMg01no367_g09.g1)
ACCAG474879AG474880
length742758
length of high quality
(start - end)		491 (41 - 531)542 (77 - 618)
definitionCHROMAT_FILE: MSMg01no367_g09.b1 PHD_FILE: MSMg01no367_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:33 2005CHROMAT_FILE: MSMg01no367_g09.g1 PHD_FILE: MSMg01no367_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTCGGAGAGGATCCGCGGAATTCTCAAAAAGCTAAAAGTAAATCTA
GTATGTGACCCAGCTATACCACTCCATGTCACATGCCCAAAAACATCATA
CACCACAGATGAAGCTCTGTTCACCACAGCTAGGAAATGCAAACAACCTA
TATGTCCTACAACAAAGTAATGGATTGTGAGAATGTAAAACAGGCACACT
ATGGAATGTTATATATTAGTAAAGAAAAACAAAGTCATGATCTTTTAAAG
TAAATAGATGGAACTAGAAAACATCATATTGAGTGAGGACACCTAGACCC
AGAAAGACAAATGTAGCATGGTCTCTCTCATCTGTGCCTCCTAGCTCCAA
ACCTTCAGTTGGGGGTATATATCCTGGAATGATGGCAGGAACCAGGAAAG
TAAAATGGGATCATGGGGAATCACAGAATTTGAGTGATATGAAAGAGAAA
ATGTGAAAAGAAAGGACCTTTAGCTGGGGAAGGGGTGGAGAGGGCTAATA
CAGAAGCCGAGAGAGGAGTGGAAAATAACACCAAGGATGTTTGAAAAAAA
TCCGTAAAGAATCATCTTGTTTTTATTTATCTAAAACTACATGTATTATA
CATAAGTATGCATATGTATATTTTAATAAAGCTATGCTACTTGGGGTAGC
AGTGTTTCTTTCCACGAGCATTAAACTATCTAATAAAAATAACCCGGAGC
TTGGGTTGAGAAAACTACCTTTCTCCGCGTGATCATGCCACT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTGAGGAATACAGAATGGCT
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAAAAATGCA
AATCAAAACAACCCTGAGAGTCCATCTCACACAAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATC
CCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGGACACATGCTCCACTATGTTCCTAGCAGCCTTATTTATAATAGCTAG
AAGCTGGAAAGAACCCAGATGTACCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATAGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTATTAAAATCACAATAGAACTCACATGATATGTACTCACTGATAA
GTGGATATTAACCCAGAAAACTTAGATACCTGAGATATAAGATACAGGTT
GCAAATCACCTGAAACTGAAGAACGAAGACCAAAGTGTGGACCTTTTGCC
CCTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_g09.b1 MSMg01no367_g09.b1 CHROMAT_FILE:
MSMg01no367_g09.b1 PHD_FILE: MSMg01no367_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:33 2005
         (491 letters)



>mm_chr3_157161598_157162488
          Length = 891

 Score =  919 bits (475), Expect = 0.0
 Identities = 487/491 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaatctagtatgtgacccagctataccactccatgtcacatgcccaaaaacatcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaaatctagtatgtgacccagctataccactccatgtcacatgcccaaaaacatcata 260

                                                                       
Query: 61  caccacagatgaagctctgttcaccacagctaggaaatgcaaacaacctatatgtcctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccacagatgaagctctgttcaccacagctaggaaatgcaaacaacctatatgtcctac 320

                                                                       
Query: 121 aacaaagtaatggattgtgagaatgtaaaacaggcacactatggaatgttatatattagt 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 aacaaagtaatggattgtgagaatgtaaaacaggcacactatggaacgttatatattagt 380

                                                                       
Query: 181 aaagaaaaacaaagtcatgatcttttaaagtaaatagatggaactagaaaacatcatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaaaaacaaagtcatgatcttttaaagtaaatagatggaactagaaaacatcatatt 440

                                                                       
Query: 241 gagtgaggacacctagacccagaaagacaaatgtagcatggtctctctcatctgtgcctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgaggacacctagacccagaaagacaaatgtagcatggtctctctcatctgtgcctc 500

                                                                       
Query: 301 ctagctccaaaccttcagttgggggtatatatcctggaatgatggcaggaaccaggaaag 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ctagctccaaaccttcagttgggggtatatatcctggaatgatggcagaaaccaggaaag 560

                                                                       
Query: 361 taaaatgggatcatggggaatcacagaatttgagtgatatgaaagagaaaatgtgaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaatgggatcatggggaatcacagaatttgagtgatatgaaagagaaaatgtgaaaag 620

                                                                       
Query: 421 aaaggacctttagctggggaaggggtggagagggctaatacagaagccgagagaggagtg 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 621 aaaggacctttagctggggaaggggtggagagggctaatatagaagccgagggaggagtg 680

                      
Query: 481 gaaaataacac 491
           |||||||||||
Sbjct: 681 gaaaataacac 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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