BAC Information

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BAC

Clone NameMSMg01-367I23
Chromosome3 (Build37)
Map Location 21,054,437 - 21,054,921
singlet/doubletsinglet
Overlap genenone
Upstream geneGyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367I23.T7 (MSMg01no367_i23.b1)MSMg01-367I23.TJ (MSMg01no367_i23.g1)
ACCAG474999AG475000
length753775
length of high quality
(start - end)
472 (20 - 491)487 (76 - 562)
definitionCHROMAT_FILE: MSMg01no367_i23.b1 PHD_FILE: MSMg01no367_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:45 2005CHROMAT_FILE: MSMg01no367_i23.g1 PHD_FILE: MSMg01no367_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTACCTATATCCAGAGGATCCGCGGAATTCTTCCTTGTTTTATCAGATAG
TTATACTGCCATTTTGGGTAGTTTATATCTCAGTGCCTTTCTTTTCTTAT
CTGTCATATAGAAGAATAACAACAACACTCTCTTAGGGTTGTGAGGATTA
ACCCTTGATAAGTTTTTCATGTAGCTGATGCCGTCTGCAAAGTACTATAT
ACATTTTTATCACTGTCTCCCAGTTCTTTTAAGGATTTCATGTAGACCAA
GATGGCTCAAAACTCCTACTTAGCCAGTGATGAACTCATCAGGCCTCTGA
GTGAGTGCTAGGATTTTATATATGAGCCGCCCAATTTGGTTTATGTTGTG
TTAGGGATGGAACCAAGGATTTCCTACAAGGGAAAGTAGCAGGGCAGGCA
GTCTACCAACTGAGCTACTACACTCAGTCCTGAATGAATATTCTTAAAGT
GTAATCATAATCTTGATGAANATTATTTATCTTCTCAATCTTTCAATGTT
TTTTTCTCCCAAAAATTATAANGCAAGTANAAAGATAGTGATGAGGAGAC
CAACCAAAGCATGAGCTTTTTTAAAAGCANGACCACAATTTTAAAAAAGA
GTAATTAAACCCTGGTTTTATATTATTAACGAAAGAAAATATTTTTTTCC
CAAATGAAGGACTTTATCCAAAGAAATTTTTCTCCCGAAAACCAAGTTTT
GGCATTGGATGGGTCTTCCACCTACCTTTAAAAAAGGTTGAGTGGGGAAA
ATG
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCATAACCCTCAAGTCCAAATTAT
CACTGAGTGGGGCCACTCCCCTCTGAAAAATAATTTATAATATCGGTGGG
AGACCCCACCCCTGGAAAAATTAATAGAAGCATTATTTATTATAAATTTT
AAAATATTTGAAAAACAGAGTATTTCCCCAACATATAAACACTGGGGGAG
GGGCTATACTGCCAAGACTAACTCCTTTGCCCTTGGTCTATTGGAGAGAC
CCTATAAATATTACCTTGGAGGGAACAGCCCCTCTGCTAACCATGGGACA
AGCGTTTGTCTGTATTTTTCCCAAAGGAACAGATAAGCACATTTGAGTTC
CTGTAATATCCATCAAGTTCTGCACTGCTGATTGTACAGGTGGAGCCACT
GGAGCTGCTGAGGAGTGCCTTACAGCACCTATCACTGAATAAATCAGATA
GAGGAAAGAAGAAACAACTGCCACTCACAGAGCAGCACCCTCCTGATGGC
CAACCAACAGGAGGCCTTCAGTGAAGACCCTGGCAGTGAGGACATCTCCA
GCCAAATACCCCCAGTGACCCCAGGAGAGGCTCAAGGCTCTCATAAAACA
GGCACAGAGAATGTCTCTTGAAGGACCAGCGAAAAGACCTTACACAATTT
TTTTCAGGATGTGGGGTTTCCTAAAGGGGTATTCTCCAGCTCATGGCCAA
AAACTCTTGGGGGTGGCCCTAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_i23.g1 MSMg01no367_i23.g1 CHROMAT_FILE:
MSMg01no367_i23.g1 PHD_FILE: MSMg01no367_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:46 2005
         (487 letters)



>mm_chr3_21054237_21055121
          Length = 885

 Score =  861 bits (445), Expect = 0.0
 Identities = 476/489 (97%), Gaps = 6/489 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccataaccctcaagtccaaattat--cactgagtggggccactcccctctgaaaaataa 58
           ||||||||||| |||||||||||||  ||    |||||||||||||||||||||||||||
Sbjct: 201 cccataacccttaagtccaaattatttca----gtggggccactcccctctgaaaaataa 256

                                                                       
Query: 59  tttataatatcggtgggagaccccacccctggaaaaattaatagaagcattatttattat 118
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttataatattggtgggagaccccacccctggaaaaattaatagaagcattatttattat 316

                                                                       
Query: 119 aaattttaaaatatttgaaaaacagagtatttccccaacatataaacactgggggagggg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaattttaaaatatttgaaaaacagagtatttccccaacatataaacactgggggagggg 376

                                                                       
Query: 179 ctatactgccaagactaactcctttgcccttggtctattggagagaccctataaatatta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctatactgccaagactaactcctttgcccttggtctattggagagaccctataaatatta 436

                                                                       
Query: 239 ccttggagggaacagcccctctgctaaccatgggacaagcgtttgtctgtatttttccca 298
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 437 ccttggagggatcagcccctctgctaaccatgggacaaacgtttgtctgtatttttccca 496

                                                                       
Query: 299 aaggaacagataagcacatttgagttcctgtaatatccatcaagttctgcactgctgatt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaggaacagataagcacatttgagttcctgtaatatccatcaagttctgcactgctgatt 556

                                                                       
Query: 359 gtacaggtggagccactggagctgctgaggagtgccttacagcacctatcactgaataaa 418
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 557 gtacaggtggagccactggagctgctgaggagagccttacagcacctatcactgagtaaa 616

                                                                       
Query: 419 tcagatagaggaaagaagaaacaactgccactcacagagcagcaccctcctgatggccaa 478
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgagatagaggaaagaagaaacaactgccactcacagagcagcaccctcctgatggccaa 676

                    
Query: 479 ccaacagga 487
           |||||||||
Sbjct: 677 ccaacagga 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 885
Length adjustment: 10
Effective length of query: 477
Effective length of database: 875
Effective search space:   417375
Effective search space used:   417375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)