Query= MSMg01no367_n06.b1 MSMg01no367_n06.b1 CHROMAT_FILE:
MSMg01no367_n06.b1 PHD_FILE: MSMg01no367_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:06 2005
(487 letters)
>mm_chr3_153504805_153505689
Length = 885
Score = 853 bits (441), Expect = 0.0
Identities = 472/483 (97%), Gaps = 2/483 (0%)
Strand = Plus / Minus
Query: 5 gaattctttatatggatttaattaccagaaatattactaggctttcttattaaccatatt 64
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 685 gaattctttgtatggatttaattaccagaaatcttactaggctttcttattaaccatatt 626
Query: 65 cttttctagtttcttcttttgcatcttccccagaaacagtgtcatctgaaaataaaaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttttctagtttcttcttttgcatcttccccagaaacagtgtcatctgaaaataaaaata 566
Query: 125 attttggcattttgaggtcagggaagatttatatccgcttctggttcctgccttgcttac 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 565 attttggcattttgaggtcagggaagatttatatccacttctggttcctgccttgcttac 506
Query: 185 tgggtagaaatttcaaggcagtgttaaacaaccattgctagaacattccttactttgcct 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 tgggtagaaatttcaaggcagtgttaaacagccattgctagaacattccttactttgcct 446
Query: 245 ttatctttccaaagaaacatcaatggccaaagaagtcctgttcctcctccagggcacatg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 ttatctttccaaagaaacatcaatggccaaagaagtcctgttcctcctccagggcacacg 386
Query: 305 gcgacttgtctcctgctgacttggaggaagctttaggtcctccagttggtgcctcaggta 364
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 gcgacttgtctcctgctgacttggaggaagctttaggtcctccacttggtgcctcaggta 326
Query: 365 gccactgcctgtggatggagagtggcgaggacagaaggctctatatgctgacctctgcta 424
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 325 gccactgcctgtggatggagagtggtgaggacggaaggctctatatgctgacctctgcta 266
Query: 425 ctgccctgtttcctttttaagtgtgatcttagccaggcctgcttaatcaagcatgcgtat 484
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 ctgcc--gtttcctttttaagtgtgatcttagccaggcctgcttaatcaagcatgcgcat 208
Query: 485 cag 487
|||
Sbjct: 207 cag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 885
Length adjustment: 10
Effective length of query: 477
Effective length of database: 875
Effective search space: 417375
Effective search space used: 417375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_n06.g1 MSMg01no367_n06.g1 CHROMAT_FILE:
MSMg01no367_n06.g1 PHD_FILE: MSMg01no367_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:06 2005
(473 letters)
>mm_chr3_153322348_153323225
Length = 878
Score = 853 bits (441), Expect = 0.0
Identities = 467/479 (97%), Gaps = 7/479 (1%)
Strand = Plus / Plus
Query: 1 atccccagagcatattactaatgtgatggacctttgttaccaaagaactgtacttagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccccagagcatattactaatgtgatggacctttgttaccaaagaactgtacttagaaa 260
Query: 61 ------caaacttcagagaaataaaaaatcccagcaacagcccctggagtataggaggcc 114
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaacaaacttcagagaaataaaaa-tcccagcaacagcccctggagtataggaggcc 319
Query: 115 ccgccacaaggctcgtgaagaagtggaacggaggcctcagcaccgtccactcagtccact 174
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 320 ccgccacaaggctcgtgaagaagtggaacagaggcctcagcacagtccactcagtccact 379
Query: 175 gtcagcctgagacgcccgccaggctggctggctgaaagaacatgctgggtctgttctgtt 234
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtcagcctgagacgcccgccaagctggctggctgaaagaacatgctgggtctgttctgtt 439
Query: 235 tgctgtagttttctgagcaggctccatggtgagcgaagaggcaaacaggaatcttccatt 294
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 tgctgtagttttctgagcaggctccatggtgagcgaagaggcgaacaggaatcttccatt 499
Query: 295 atccctttcagctgaaaagaaacctcaccacagaatgcacttactgtgaaagttggtaca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atccctttcagctgaaaagaaacctcaccacagaatgcacttactgtgaaagttggtaca 559
Query: 355 aacagcagccacggggaggtcgcgattagaggaggcttccagggagaacggcttcttaga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacagcagccacggggaggtcgcgattagaggaggcttccagggagaacggcttcttaga 619
Query: 415 gagttggactctgatgggcagagggagatggtgacgggtgaggggtggacgaaagaggg 473
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 gagttggactctgatgggcagagggagatggtgacgggtgaggggtgaacgaaagaggg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 878
Length adjustment: 10
Effective length of query: 463
Effective length of database: 868
Effective search space: 401884
Effective search space used: 401884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
