Query= MSMg01no367_n11.b1 MSMg01no367_n11.b1 CHROMAT_FILE:
MSMg01no367_n11.b1 PHD_FILE: MSMg01no367_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:07 2005
(607 letters)
>mm_chr3_152338911_152339916
Length = 1006
Score = 1151 bits (595), Expect = 0.0
Identities = 601/603 (99%), Gaps = 1/603 (0%)
Strand = Plus / Plus
Query: 5 gaattctttatatttctgtgttttggacaatgactatccccaaataggcacacatgggtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttatatttctgtgttttggacaatgactatccccaaataggcacacatgggtg 264
Query: 65 ggaggaatgaaaatcctatatctatagctattacatctgtagctatactataataagatg 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 g-aggaatgaaaatcctatatctatagctattacatctgtagctatactataataagatg 323
Query: 125 cttaagagacagtcaaaggaatttataatttatgaatgttctattatcctttaaatgaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttaagagacagtcaaaggaatttataatttatgaatgttctattatcctttaaatgaaa 383
Query: 185 catattgacactgttttaaatcacagcatgacggcttgaattaaccccttatataaattc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catattgacactgttttaaatcacagcatgacggcttgaattaaccccttatataaattc 443
Query: 245 taaattatctcacaggactatctttaggtgctaagagaatttagctctaacagtggcttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaattatctcacaggactatctttaggtgctaagagaatttagctctaacagtggcttt 503
Query: 305 ataatatccagaaattcaatagtttataagtacacaactgagttacacacatcacagtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataatatccagaaattcaatagtttataagtacacaactgagttacacacatcacagtaa 563
Query: 365 aaataacacaggataattccttcagtcaacagctgtttcataaggacctactgtatacca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaataacacaggataattccttcagtcaacagctgtttcataaggacctactgtatacca 623
Query: 425 gacaccaatggcaggagctgaagtgagtaggacacacacctggaccagctaggtggttca 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 gacaccaatggcaggagctgaagtgagtaggacactcacctggaccagctaggtggttca 683
Query: 485 gccgagtgggtgacccaagtgctgtctgacctgcagtctaaaaacagtacagaatccaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gccgagtgggtgacccaagtgctgtctgacctgcagtctaaaaacagtacagaatccaaa 743
Query: 545 tgatccattaattgcctaggagtctgaagtgctatcccacacacctgcatcagaagcagc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgatccattaattgcctaggagtctgaagtgctatcccacacacctgcatcagaagcagc 803
Query: 605 aga 607
|||
Sbjct: 804 aga 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_n11.g1 MSMg01no367_n11.g1 CHROMAT_FILE:
MSMg01no367_n11.g1 PHD_FILE: MSMg01no367_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:07 2005
(492 letters)
>mm_chr3_152523085_152523975
Length = 891
Score = 866 bits (448), Expect = 0.0
Identities = 481/492 (97%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 1 acccctgaaccacacgtcctccaccatttgacaggtaagagaactaagaaatgggagcac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 691 acccctgaaccacacgtcctccaccatttgacaggtaacagaactaagaaatgggagcac 632
Query: 61 tgaagacttgcctcaagctcaaaagctcagaggccactggagtttaacccaaggggttgg 120
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 631 tgaagacttgcctcaagctcaatagctcataggccactggagtttaacccaaggggttgg 572
Query: 121 aagtggtctgtagatagagaacgtgtctgacctagcgagccaggcactgtgctctgaatg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 571 aagtggtctgtagatagagaacgtgtctgacctagcgagccaggcgctgtgctctgaatg 512
Query: 181 gaggctggcctcatacagaagcaaggacagggcttgtttagagatgctagggagcggagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaggctggcctcatacagaagcaaggacagggcttgtttagagatgctagggagcggagt 452
Query: 241 taattggttactgaagtagatcaggaggaagcaagcagtgaaggatgccttttagaaatg 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 taa-gggttactgaagtagatcaggaggaagcaagcagtgaaggatgccttttagaaatg 393
Query: 301 caggtggtggagggaggggagttctagatcacagggtttgagagctgtggtcagaagcat 360
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 392 caggtggtggagggagtggagttctagatcacagggtttgagaactgtggtcagaagcat 333
Query: 361 cctacagaaagaaatgaggacctgtcctccagcctcaggctacagtaaccatcggcaggt 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 332 cctacagaaagaaatgaggacctgtcctccagcctcaggctacagtaagcatcggcaggt 273
Query: 421 caggtttcttatctctttgtataaaaatgacacttcctacaagctgtctcagattgccca 480
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 272 caggtttcctatctctttgtataaaaatgacacttcctacaagctgtcccagattgccca 213
Query: 481 aaaagtacaata 492
||||||||||||
Sbjct: 212 aaaagtacaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
