Query= MSMg01no368_a15.b1 MSMg01no368_a15.b1 CHROMAT_FILE:
MSMg01no368_a15.b1 PHD_FILE: MSMg01no368_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:22 2005
(544 letters)
>mm_chr3_32566830_32567773
Length = 944
Score = 799 bits (413), Expect = 0.0
Identities = 460/481 (95%), Gaps = 9/481 (1%)
Strand = Plus / Minus
Query: 1 agtggtactctggacacacggtcttagcatgcccattttgtcgtgacttttgctccagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agtggtactctggacacacggtcttagcatgcccattttgtcgtgacttttgctccagag 413
Query: 61 ccttccaaggaagccattcagactgctaaggatgacttgtgaacagtttatggaagcaaa 120
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 412 ccttccaaggaagccattcagactgctaagaatgacttctgaacagtttatggaagcaaa 353
Query: 121 cattctgaaaccataagtgtaagcattgatttaaggctgtcaaattaaataacaggaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 352 cattctgaaaccataagtgtaagcattgatttaaggctgtcaaattaaataacagaaaac 293
Query: 181 agaagtcaacccagtctccctcactcacaagcagaagctgggagcccaggagggtaagaa 240
|||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 292 agaagtcagcccagtcttcctcgctcacatgcagaagctgggagcccaggagggtaagaa 233
Query: 241 caattcaataatttcaagatgtgacttttgggtgttgttgttgttgttgttatttttgtt 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 232 caattcaataatttcaagatgtgacttttgggtgttgttgtt---------atttttgtt 182
Query: 301 cttgttgtagttgttgtttgagacacgctatcctgaaactttgctttgtagaccaggctg 360
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 181 cttgttgtagttgttgtttgagacaggctgtcctgaaactttgctttgtagaccaggctg 122
Query: 361 gccttgaactcatagagatacacctgcctctgttcccagagtgctgggatctcagacacg 420
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 121 gccttgaactcatagagatacacctgcctctgttcctagagttctgggatctcagacacg 62
Query: 421 agccaccactgtccaggaagacgagactcttgtaaagcttattttagtaagagcaaagac 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 agccaccactgtccaggaagacgagactcttataaagcttattttagtaagagcaaagac 2
Query: 481 a 481
|
Sbjct: 1 a 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_a15.g1 MSMg01no368_a15.g1 CHROMAT_FILE:
MSMg01no368_a15.g1 PHD_FILE: MSMg01no368_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:22 2005
(486 letters)
>mm_chr3_32373556_32374441
Length = 886
Score = 866 bits (448), Expect = 0.0
Identities = 472/486 (97%), Gaps = 10/486 (2%)
Strand = Plus / Plus
Query: 1 acagacaaaatcatgcctcatctccacgtgcctcccagcatgcttgcctcggatgctgga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 acagacaaaatcatgcctcatctccacgtgcctcccagcatgcttgcctctgatgctgga 260
Query: 61 agcagggcggggatgttgaatcacagcaacaggaagaaaactagaacatacattacggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagggcggggatgttgaatcacagcaacaggaagaaaactagaacatacattacggac 320
Query: 121 accttggaaacaggcaccagacatgtctgtagggaagtttctagactggattgagaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttggaaacaggcaccagacatgtctgtagggaagtttctagactggattgagaggga 380
Query: 181 agacacgctgagtggtgccattccatggaatgaaatcgtagactgaataaaaagagaaag 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 agacacgctgagtggtgccattccatggaatgaaattgtagactgaataaaaagagaaag 440
Query: 241 acactgaatcaaatccaggccatgcagcacagctccaggggaggaacacagagacctgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactgaatcaaatccaggccatgcagcacagctccaggggaggaacacagagacctgct 500
Query: 301 gaccaccatgccacccacagacctgcaccctccagctggatggccagggccagcatgcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccaccatgccacccacagacctgcaccctccagctggatggccagggccagcatgcag 560
Query: 361 caggagccaccacaatatgtgaatatgtggtggtcaaatgggagagaagaaaagtggagc 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 caggagccaccacaatatgtgaatatgtggtggtcaaa----------gaaaagtggagc 610
Query: 421 agtttgaacattaagaagatggatggaaggcaatagtgtggctcgtgccattaatcccag 480
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 611 agtttgaacattaagaagatggatgaaaggcaatagtgtggctcatgccattaatcccag 670
Query: 481 cacttg 486
||||||
Sbjct: 671 cacttg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
