XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCTCAG
GCATTCACTGAGCAGCTGTGTGACCTGAGGCTGATATTCAATGTTGCTGA
ACTTCAGTTTCTTCATTTGGAAAATGAGGTTATAGCAACCCATGGGTGTG
TATTTAGGAATAAAAGAAATTTACTATGTTTAAAACTTCAGTACTAAGTA
CAGCATGTAATATAAACTCTATAAGTAAAGTCCTATTTTTTTTTACAGCT
CAAGAAATATTTACTGTTCTAAAAGATGTCTCAAAAACTGCAGAATCAGC
TTCAGGATAGGTTCTAGAAAAAGCTTTGGTCTAGGGGAACATCTGGTTAG
ATTCTTGTATGCCATGTCAGGCATGATACACACAACAAATACATTTAAAA
AAATTAAAACAAGGCTTCATATATTCCAGGCAAGATGTGAATTCACTGTA
TGGCCAAGGATGGCCTTGAAAATCCCACATCCCTGCTTTCTTCTTTTGAG
TGCTGAGGTGACAGTTCTGCATTCCCACACATAGGTTCATATTCCAATTT
TAAGCCTTAATCAAAGACTCTGGAATTATCAAGAAAAGATTAAAAGTAAA
ATATAATCACCAAAGAAATAATATAGGTATTTTCGATGAATCATTTGAGC
TATTTGTGTTAAATATTTCTTACTTCTATTTTTCCAAAGAATTGGTTGCC
TACATTCTTCTATATCATATCCTAGATAATATGATT

ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCAATTTATGTGTCTTAAGTGCATGTT
TCTTTTAGCAATACAGACTTATCTTAACCTCTGGGAGACAACAAAGTGGA
ATTCCAGTAACCTGCATTGGTTTGGACTCTTGGACAACCCTGACAATTCA
AAATGAGATTTTTTTGATTGGTATTGGAGCTTTTATAATATAGTCTATGA
CTCTGTGGGGGAGCATCATCAGCCTAAGAGACAAGAGTGGATTATACATA
CATGCATGCATGCATACATATGTATATACATACACATACACACCACATAT
GGTAAAATCTGGTCTCACAGTTTCTCAGCTTTACCTTTTTACACATTGCC
ATTTTAAGTGTTTTAAACAATCCCTTTCTCTTAGATGGATTCATCAAATG
TGTGTGTGTATATCTCTGTGTGTATGTATCTATGTGTGTGTATGAGAAAA
AGAAACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAAACTCNNCCAATCCTAAGAGGGAAATATT
CAGAAATTCATTTGCTTTTTACGAGACAGTTACTGTTGAACAATTCAGAG
TCTCCAGGTGACAGATAATTTTCTTTTCCCAGGGTTATTTGCACAGCCTA
GCATTCATGATAGAATGATATCTGAGCTCCAGTGGGAATGTACTGTACN

Query= MSMg01no368_i03.b1 MSMg01no368_i03.b1 CHROMAT_FILE:
MSMg01no368_i03.b1 PHD_FILE: MSMg01no368_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:58 2005
         (636 letters)



>mm_chr3_26141022_26142057
          Length = 1036

 Score = 1158 bits (599), Expect = 0.0
 Identities = 626/635 (98%), Gaps = 1/635 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagcagctgtgtgacctgaggctgatattcaatgttgctgaacttcagtttcttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctgagcagctgtgtgacctgaggctgatattcaatgttgctgaacttcagtttcttcatt 259

                                                                       
Query: 61  tggaaaatgaggttatagcaacccatgggtgtgtatttaggaataaaagaaatttactat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggaaaatgaggttatagcaacccatgggtgtgtatttaggaataaaagaaatttactat 319

                                                                       
Query: 121 gtttaaaacttcagtactaagtacagcatgtaatataaactctataagtaaagtcctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtttaaaacttcagtactaagtacagcatgtaatataaactctataagtaaagtcctatt 379

                                                                       
Query: 181 ttttttt-acagctcaagaaatatttactgttctaaaagatgtctcaaaaactgcagaat 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttttttttacagctcaagaaatatttactgttctaaaagatgtctcaaaaactgcagaat 439

                                                                       
Query: 240 cagcttcaggataggttctagaaaaagctttggtctaggggaacatctggttagattctt 299
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 440 cagcttcaggataggttctagaaaaagctttgttctaggggaacatctagttagattctt 499

                                                                       
Query: 300 gtatgccatgtcaggcatgatacacacaacaaatacatttaaaaaaattaaaacaaggct 359
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 500 gtatgccatgtcaggcatgatacacacaacaaatacattttaaaaaattgaaacaaggct 559

                                                                       
Query: 360 tcatatattccaggcaagatgtgaattcactgtatggccaaggatggccttgaaaatccc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcatatattccaggcaagatgtgaattcactgtatggccaaggatggccttgaaaatccc 619

                                                                       
Query: 420 acatccctgctttcttcttttgagtgctgaggtgacagttctgcattcccacacataggt 479
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct: 620 acatccctgctttcttctttggagtgctgaggtgacagttctgcattcccacacctagtt 679

                                                                       
Query: 480 tcatattccaattttaagccttaatcaaagactctggaattatcaagaaaagattaaaag 539
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcatatttcaattttaagccttaatcaaagactctggaattatcaagaaaagattaaaag 739

                                                                       
Query: 540 taaaatataatcaccaaagaaataatataggtattttcgatgaatcatttgagctatttg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taaaatataatcaccaaagaaataatataggtattttcgatgaatcatttgagctatttg 799

                                              
Query: 600 tgttaaatatttcttacttctatttttccaaagaa 634
           |||||||||||||||||||||||||||||||||||
Sbjct: 800 tgttaaatatttcttacttctatttttccaaagaa 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)