Query= MSMg01no368_k11.b1 MSMg01no368_k11.b1 CHROMAT_FILE:
MSMg01no368_k11.b1 PHD_FILE: MSMg01no368_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:09 2005
(618 letters)
>mm_chr3_151127910_151128927
Length = 1018
Score = 1122 bits (580), Expect = 0.0
Identities = 607/616 (98%), Gaps = 2/616 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgttatatcc-agagcaaagctatgtctataatgatgtaatagaaataatgat 62
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttata-cctagagcaaagctatgtctataatgatgtaatagaaataatgat 262
Query: 63 ttgtgtatcccaggaggtgttccacctaaactaattctgcccacattaatataatctgct 122
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgtgtatcccagaaggtgttccacctaaactaattctgcccacattaatataatctgct 322
Query: 123 atttataagcttagagtttctatagccgaagttactggattataaaatcttaaacgtcct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atttataagcttagagtttctatagccgaagttactggattataaaatcttaaacgtcct 382
Query: 183 tcctacacccactcacacacagcttagttcatgccaagtcaccttatcttttcgaccatg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcctacacccactcacacacagcttagttcatgccaagtcaccttatcttttcgaccatg 442
Query: 243 caatagttcttttcctgaccctgctatggctgggtagactgccctttgatgtctcagttt 302
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caatagttctttttctggccctgctatggctgggtagactgccctttgatgtctcagttt 502
Query: 303 ttggcagatgcctcaatccaaacccagaggactagtgagctcattattgccctgaaagcc 362
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 503 ttggcagatgcctcaatccaagcccagaggaccagtgagctcattattgccctgaaagcc 562
Query: 363 tttgaagctttgttctattgcctagttttgaacgctcttttaaggttttctctcacattg 422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 563 tttgaagctttgttctattgcctagttttgaacgttcttttaaggttttctctcacattg 622
Query: 423 ttagattatgaaattacagctcattataaaccatgttttaatcagggatacatatatagc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttagattatgaaattacagctcattataaaccatgttttaatcagggatacatatatagc 682
Query: 483 tagtccagggggagtaaaacatcagcttctgaagatggaaaagagaggagaaaaacttga 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 683 tagtccagggggagtaaaacatcagcttctgaagatggaaaagagaggagaaaagcttga 742
Query: 543 tgacctgagtgttctactaatccacccggcagatgattaacagattgttttatgtttaag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgacctgagtgttctactaatccacccggcagatgattaacagattgttttatgtttaag 802
Query: 603 ccactttctcattggt 618
||||||||||||||||
Sbjct: 803 ccactttctcattggt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_k11.g1 MSMg01no368_k11.g1 CHROMAT_FILE:
MSMg01no368_k11.g1 PHD_FILE: MSMg01no368_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:09 2005
(488 letters)
>mm_chr3_151308141_151309028
Length = 888
Score = 928 bits (480), Expect = 0.0
Identities = 486/488 (99%)
Strand = Plus / Minus
Query: 1 acgcagaagttctcattaatttgaaacaatttttcatgccaacagttaatttatactgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acgcagaagttctcattaatttgaaacaatttttcatgccaacagttaatttatactgcc 629
Query: 61 tgttgaagttgaagattgacttttggagtacaaatagctgaccagatgtgaccacagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgttgaagttgaagattgacttttggagtacaaatagctgaccagatgtgaccacagcac 569
Query: 121 agatggcacatgtcaacccctgcaagattacttggtctcataaacccaggagtccagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agatggcacatgtcaacccctgcaagattacttggtctcataaacccaggagtccagagg 509
Query: 181 tgtatcaacattaaagaatatctagggtggggagatgactcagtgagtcagagtacataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgtatcaacattaaagaatatctagggtggggagatgactcagtgagtcagagtacataa 449
Query: 241 gtggtctgtatgcatcaaactatgagtttctattcaaaatgccaggcacggctttggtac 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtggtctgtaagcatcaaactatgagtttctattcaaaatgccaggcacggctttggtac 389
Query: 301 ctgtaaccgagttcagccctgaggagcagacaggtgggtcctgagagtttgctggacagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctgtaaccgagttcagccctgaggagcagacaggtgggtcctgagagtttgctggacagc 329
Query: 361 taagccagagactcttttcaaggcaatgagatagatggtgacagagcaagataatgtctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taagccagagactcttttcaaggcaatgagatagatggtgacagagcaagataatgtctt 269
Query: 421 gctctggcatctccataagcatttgttggagtgcacacctacacacatgcatacagcata 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 actctggcatctccataagcatttgttggagtgcacacctacacacatgcatacagcata 209
Query: 481 cacacaca 488
||||||||
Sbjct: 208 cacacaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
