Query= MSMg01no368_p08.b1 MSMg01no368_p08.b1 CHROMAT_FILE:
MSMg01no368_p08.b1 PHD_FILE: MSMg01no368_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:33 2005
(464 letters)
>mm_chr3_14016412_14017274
Length = 863
Score = 785 bits (406), Expect = 0.0
Identities = 445/464 (95%), Gaps = 13/464 (2%)
Strand = Plus / Plus
Query: 7 attcactgtgtatcttaacttcataatggtctattatttggaccactgaccataatgatg 66
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcactgtgcattttaacttcataatggtctattatttggaccactgaccataatgatg 266
Query: 67 caattctttccttgaagaaaataaatgcttagtgataaataagtaatcataattaaagct 126
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caattctttccttgacgaaaataaatgcttagtgataaataagtaatcataattaaagct 326
Query: 127 ttcatagtacttatagtaccacaattggtatttagcccattgattataatttaaacacat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcatagtacttatagtaccacaattggtatttagcccattgattataatttaaacacat 386
Query: 187 tttaattaatatataactatattacttccctatttttcttttctttcctccaaaatgcct 246
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tttaattaatatgtaactatattacttccctatttttcttttctttcctccaaaatgcct 446
Query: 247 catgtctccttctatcaacaccccccatacccccccagacactccttctcaaattgatgg 306
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 447 catgtctccttctatcaacaccccccatacccccc-agacactccttgtcaaattgatgg 505
Query: 307 ccttttaaaattattattattgtaacatgaagaaatagttgaacaaatatataaatacag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccttttaaaattattattattgtaacatgaagaaatagttgaacaaatatataaatacag 565
Query: 367 caccccca------ccctgtttatggtggctcctatgggtatgatttgggggcctgacta 420
|| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tac----aatgagtc--tgtttatggtggctcctatgggtatgatttgggggcctgacta 619
Query: 421 ctagtcataactagttgcatgactagttaaggacctcagctctg 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctagtcataactagttgcatgactagttaaggacctcagctctg 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_p08.g1 MSMg01no368_p08.g1 CHROMAT_FILE:
MSMg01no368_p08.g1 PHD_FILE: MSMg01no368_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:33 2005
(521 letters)
>mm_chr3_14171558_14172476
Length = 919
Score = 795 bits (411), Expect = 0.0
Identities = 477/521 (91%), Gaps = 37/521 (7%)
Strand = Plus / Minus
Query: 1 attgtatcttcattccattttctcaatttaataacccccttaactacttattcttaactg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 attgtatctccattccattttctcaatttaataacccccttaactacttattcttaactg 817
Query: 61 ttaagttttatagcctgagctaactgtcctgttaaattattttcatctttattcaatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ttaagttttatagcctgagctaactgtcctgttaaattattttcatctttattcaatttg 757
Query: 121 tcatcaaagaagtgtaaccaaaagactttatttataaataaatattgataaataaatatt 180
||||||||||||||||||||| |||| ||||||
Sbjct: 756 tcatcaaagaagtgtaaccaagagac----tttata------------------------ 725
Query: 181 tatttatttatagtggatcataaatacccatatcattcagttttagtagtttagaaatca 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 724 -------ttatagtggatcataaatacccatatcattcagttttagtagcttagaaatca 672
Query: 241 atgtttttctgtatgatcatagaatatcaaagattgtgtaaagtatgacaacatgcttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atgtttttctgtatgatcatagaatatcaaagattgtgtaaagtatgacaacatgcttaa 612
Query: 301 tctatttactaaaattgaaagagaacagaaaattattaacacacaccatgaaaatagata 360
||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 611 tctatttactaaaattgaaagagaacagaaaattattaacata-attatgaaaatagata 553
Query: 361 aaaggtagatattactaaattcagcttatttaagtcctatggatacaaataataaatact 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 552 aaaggtagatattactaaattcagcttatttaagttctatggatacaaataataaatact 493
Query: 421 actgttttccatatttatgctttagtttatgtccttggcttatagatgtaattataaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 492 actgttttccatatttatgctttagtttatgtccttggcttatagatgtaa-tataaaat 434
Query: 481 gattcatactgatttaaatataatgtgctaatgtgattata 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gattcatactgatttaaatataatgtgctaatgtgattata 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 919
Length adjustment: 10
Effective length of query: 511
Effective length of database: 909
Effective search space: 464499
Effective search space used: 464499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
