BAC Information

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BAC

Clone NameMSMg01-369I01
Chromosome3 (Build37)
Map Location 132,296,554 - 132,296,798
singlet/doubletsinglet
Overlap genenone
Upstream genePapss1, Olfr375-ps1, Dkk2, LOC100039018
Downstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369I01.T7 (MSMg01no369_i01.b1)MSMg01-369I01.TJ (MSMg01no369_i01.g1)
ACCAG476473AG476474
length888793
length of high quality
(start - end)
116 (63 - 178)245 (70 - 314)
definitionCHROMAT_FILE: MSMg01no369_i01.b1 PHD_FILE: MSMg01no369_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:14 2005CHROMAT_FILE: MSMg01no369_i01.g1 PHD_FILE: MSMg01no369_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGGAATTCAC
TCTGTTTACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTC
CCAAGTGCTAGGATTAAAGGCGTGCACCACCACCGCCCGGCTGGTTGTCC
TCATTCTTAATAGCTGAGTAATAGATCTCAGAAAATGGGGAGATCCCATG
GATTGGCAGAATTAACACAGTAATAATGGCTTTCTTACCAAAGGTAATCT
ATATATTCTATGCTTTCCCCACCTTCATCAGCATATATTTATATTTATTT
TTTAATTCGGCGCTTGTTTTTCTCTTCCGTTTCTGTTTTTACAATTCTTG
TCTTCTTCTTTTCTCACTGTTCTTTTGTCCTGTTTTTGCTTTTTTTTCTC
TTTTCTCTATATTTATTTTTTTATTTTTCTTTATTTTTTTTTTAATCTTT
TCTTATTTCTTGTATTCTTTATTCTTCTTTCCTTTTCTTTTTCTCTCTTT
TTTTTTCCTTTTTTTCTTTTCTTTTCTTATTTTTGCACCTTTCTCCTTTT
TCCTTTTCTCTTTTTTATATTATTTTCTTTTCTTTTCTTCTTTTATTCTT
TTTGTCTTCTCTTTTTTTTTTTCTTTTGCTTTTCTTGTTTTATCTTTCTC
CCTTTTTTCTCTTCTTTCCACTTTATTTCTTCTCCCTTTTCCTCTCGCCT
TCTATTATTCTTCTCTTATCCTATTTTTGCTCCTCGCTTCTACTCTTCTG
TCTTCTTCCGTTTCTCTTCGCTTTTCTTTCTCTTTTTTTTTCTTTCCCTT
CTCTTACTTTTTTATCTTCCTCCTTGTTTTCTCCTGCTTCTTTTATTTTC
ACTTTTATTTTCCTGCACTTTCTTTCCTCTCTTACCGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCTGAAATATCAGGACTGAGATTACAGAGTTCAGGAATCTGT
GGAAAGGATTTAAAATCTGCTCACTGTGGAAGATGTAGAAACAGAACAAG
AGAAGAAACAGCTAGTTCAGCTTTCTTCCTCTTCTCTTTTATTGAATTTT
CAATTTATCTATTTTTATATCTATGAGTATTTTGCCTGAATGAATGTATA
TGCACCACATGCATGCCTGATGCCTATAGAGGCCAGAAGATGGGTGTTGG
ATCCTTTGGAACTGGATTTTTTGATGGTGGTGAGCTACCAAGTATGAATG
CCAGGAATCATATGCTGGCCCTCTGGAAGAACAGCTAGTTCTCTTAGCCA
CTGCATTATCTCTCCAGTATCCCCTAATCTTTTGGAACATGAGCCTCACT
CTTGTTCATGCTGTCTGTCTTTGAACTCACTATGTGGTTCGGACTGACTT
CAAATGATTCATCTGTACCCACTCTGTTCTCTTGCTTATATTGTTCATCT
GAAGTCTTCTGGTCAGTTCCATTCATGTTTTTTTTAACTTAACTTCCTTT
TTATTCATTCTGATTTGCTTTTTTCCATATTTTTTTCCGCTTTTTTATCC
TTTGGCCCCCATCTTTATCTCTTTCTTTATTCTTTCTTTTATTAGTTGTT
TTCATGTTTATTCTTAATTTTCCCCCTTTCAGTTTTATCATTTTTACCTA
AACTATTTCCTCTTACGTTTCAATTTATTATTCTTCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_i01.g1 MSMg01no369_i01.g1 CHROMAT_FILE:
MSMg01no369_i01.g1 PHD_FILE: MSMg01no369_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:14 2005
         (245 letters)



>mm_chr3_132296465_132297109
          Length = 645

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggactgagattacagagttcaggaatctgtggaaaggatttaaaatctgctcactgtgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 334 aggactgagattacagagttcaggaatctgtggaaaggatttaaaatctgcttactgtgg 275

                                                                       
Query: 61  aagatgtagaaacagaacaagagaagaaacagctagttcagctttcttcctcttctcttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 274 aagatgtagaaacagaacaagagaagaaacagctagttcagctttctttcttttctcttt 215

                                                                       
Query: 121 tattgaattttcaatttatctatttttatatctatgagtattttgcctgaatgaatgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 214 tattgaattttcaatttatctatttttatatctatgagtattttgcctggatgaatgtgt 155

                                                                       
Query: 181 atgcaccacatgcatgcctgatgcctatagaggccagaagatgggtgttggatcctttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 154 atgcaccacatgcatgcctgatgcctatagaggccagaagatgggtgctggatcctttgg 95

                
Query: 241 aactg 245
           |||||
Sbjct: 94  aactg 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)