BAC Information

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BAC

Clone NameMSMg01-369N01
Chromosome3 (Build37)
Map Location 46,092,137 - 46,092,587
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849, LOC383850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369N01.T7 (MSMg01no369_n01.b1)MSMg01-369N01.TJ (MSMg01no369_n01.g1)
ACCAG476710AG476711
length726784
length of high quality
(start - end)
447 (57 - 503)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no369_n01.b1 PHD_FILE: MSMg01no369_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:39 2005CHROMAT_FILE: MSMg01no369_n01.g1 PHD_FILE: MSMg01no369_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCGGAGTTTC
AAACCTGAGAGGGGAAAAACATTTGGAATGTAAATAAATAAAATGATTTA
AATGAAAAACAAATAAATAGTACAAACTATTAAAATTTGTGCTATGACTA
AGTAAAATTGATAACTTAATAATAAATGTGCTGTGATTTTCTTTTTACAC
TTACATGCCCTAGTTTTATGGTGTTAAAAGTTAAGTATTTGGTTATTTTG
GGGGTTGATTAAAATAAATTCTCATCTGGGCATAGGTGGCACATCCCTGT
AATTCCAATACTGAACAAATGGAAACAGTGGTATCAGGAATTAAAAGCTG
TCCTTTAATACCTAGCTAAGTTTAGGCAAAAGCAGGGCAATAGGAGTTTC
TACCTCAAAACATACAATAACAAAACCACAAATCTTTCCTTTGTTTTTAT
GATTCACATTTTGAGAAGTTTTCTATATATATTGTTATGAGCTTTGAAAT
ATATGATTTCAAATGAGTATCATCCAACAACAGGCACACATTCCTACCCT
GCAGGACAATTATTTGGCGAGGTAGCTATACCACAGCTACCTTACCTCCT
CCCAGGACCAACCTTTTCCGAAACCACCCCCCCCTTGCGCCCCACCGACC
TAATCCCCTCACGCGCTCTCCCCCCGGGGACACCACTTTTCCCCCCCCTT
CCTCCCCCCTATCCCCTCCCCCCTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTTTGTGAGAATTTTATTGAGTATTTTTGT
ATCAATATTCATAAGGGAAATCATTCTTAAGTTCTCTTTCTTTGCTGGGT
CTGTCTGTGGTTTAGGTATCAGAGTAATTGTGGCAGCATAGAATGAATTG
AATTAGAGTACCTTATGATTCTATTTTGTTTTTTGTTTTTTGTTTTTTGT
TTTTTTTTTGTTTTTTTTTTTTTTGGTTGGGAGACTATTAATGACTGTTT
CTACTTCTTTATGGGATTTGGAATGGTTTAGATCATTAATCTGATCCTGA
TTTATCCTTGGCCCCTGGCATCTGGCTAGAAGATTGTCCATTTCATCCAG
GTTTTCCAGTTTTGTTGATTATAGGCTTGTGTATTAAGATATGATTCTTT
TTTACCTTGCCCTCTTCGTTCCGCTCTCGTTTTTTGTCCTCTTTAACCTC
CCCCCCTTCCTCGCCCCCTACTCCCCCTCTCTTCCTTTTTCTTTTCTTAC
CTTTTCTCTCCTCTCTTCTTTGTTCTCTTTTCATCGCTCTTTGCTCCTCT
GTTTCCTCCACCCCTTTTTCCCCTTTTTTTCTTCTCCCCCCTTTTTTTTC
TCTCCCCCCGTTCCCCCCCGTTCTTTTTTTTCCCCTCCTTTCTCCCGCTT
TCTTCTTCCCTCTCCTTCTTTCCCCCTCCTTCTCTCTCTCTTCCTTTTTT
TTTTTTTTCCTTTGCACACCCTCCTCCTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_n01.b1 MSMg01no369_n01.b1 CHROMAT_FILE:
MSMg01no369_n01.b1 PHD_FILE: MSMg01no369_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:39 2005
         (447 letters)



>mm_chr3_46092108_46092958
          Length = 851

 Score =  806 bits (417), Expect = 0.0
 Identities = 441/451 (97%), Gaps = 4/451 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaggggaaaaacatttggaatgtaaataaataaaatgatttaaatgaaaaacaaataa 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gagagggggaaaacatttggaatgtaaataaataaaatgatttaaatgaaaaacaaataa 421

                                                                       
Query: 61  atagtacaaactattaaaatttgtgctatgac----taagtaaaattgataacttaataa 116
           |||||| ||||||||||||| |||||||||||    ||||||||||||||||||||||||
Sbjct: 420 atagtagaaactattaaaatgtgtgctatgactaattaagtaaaattgataacttaataa 361

                                                                       
Query: 117 taaatgtgctgtgattttctttttacacttacatgccctagttttatggtgttaaaagtt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 taaatgtgctgtgattttctttttacacttacatgccctagttttatggtgttaaaagtt 301

                                                                       
Query: 177 aagtatttggttattttgggggttgattaaaataaattctcatctgggcataggtggcac 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aagtatttggttattttgggggttgattaaaataaattctcatctgggcataggtggcac 241

                                                                       
Query: 237 atccctgtaattccaatactgaacaaatggaaacagtggtatcaggaattaaaagctgtc 296
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 240 atccctgtaattccaatactgaacaattggaaacagtggtatcaggaattaaaagctgtc 181

                                                                       
Query: 297 ctttaatacctagctaagtttaggcaaaagcagggcaataggagtttctacctcaaaaca 356
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ctttaatacctagctaattttaggcaaaagcagggcaataggagtttctacctcaaaaca 121

                                                                       
Query: 357 tacaataacaaaaccacaaatctttcctttgtttttatgattcacattttgagaagtttt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tacaataacaaaaccacaaatctttcctttgtttttatgattcacattttgagaagtttt 61

                                          
Query: 417 ctatatatattgttatgagctttgaaatata 447
           || ||||||||||||||||||||||||||||
Sbjct: 60  ctgtatatattgttatgagctttgaaatata 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 851
Length adjustment: 10
Effective length of query: 437
Effective length of database: 841
Effective search space:   367517
Effective search space used:   367517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)