CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTAAGCCCATTTCCAATTCTGGATCCCATGAAGTTGCTTGGTG
TTGCAGGTCTTCACTCACCCTCTCTCTGAATCACCTTTCTCCTTGAACAG
ATAGGGTAGTGAGAATCTCATGAAGCAGTCTTGTGAGCTTTATCAAGACA
TGTACAAATGTGGAGGAAAAACAATTGGTGAATACACTGTACACTATCAT
TCACTAACTGAACAGAGGAACTCCTGGGAAGTGCCAAATGGTATAGGATT
TAGAATTTTCAGGGTTTTTCTTTTTCTTAAAACTGTTATCTGTGGCTTAA
ATTGCTTTCAAAAGTATTTTTATTAGATTTTATTTTTGCTTAAACTTACA
AAACAATGGATTTGTGCAACATTTTCATAAATGTATATCATTGTATATGC
TCTAGCTTGCTTTTTCATTGCTGTGATAAAACACTGAACAAAAGCAACTT
GGCAAAGCAAAGGTTTATTTCATCTTATAGACTATGGTCCTGTTTTTGAG
GGAAGTCATTGTGTCCTGAAAGCAAAGACCATGGAGGGATGCTTCTTATT
GGCTTGGTCTCTTTTTTTGCTTAGATCTTCCTAACTTAGGCCAGGCTCAC
CTGCCTAGGGATGATACTGCTCACAGTGGTCTCACTCCCTCTCTATTCAT
CATAAATGCAACACGCGCCTCACTAACCATTCTGATG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTACTTGCCTTGGTGTAGTTACAGTC
TTTTTTCTGGCTTCTTTTAGACATTGTTTCCCACCTCGAAGGGTGTATCT
CAAATAAGTAACTTCAGTCTGACACAGCTGAGCCTTTTTAGCTGAGGCTC
TGTCTTCTGTTGTCCAGATTTCCTGACTAGATCTTGTCTTTTTTTTTTTT
TTCTTATCACTGTGGCCAAAATTCTAGTCAAATTTCTCTCTTGTCTATGG
TCTCTCTTGTCTTCTCTTTCTTCTGCCTCTCCCCCTCCCCCCCCCCTTCT
CTCGTAATACATCTTCTCAGCCTCTTACTTACTGGTTCTACTCTAAATAT
TTCTCATTCAGGGTTTCTCTCTCATCTCAGACCTCTCTAATCTCTTTCAT
CTCTATTTTCACTGTCATGTATCTCTCCTGAGTCTGCTGAAGCTTTGCTC
TTCCTTACAGTCTAAGCTCACCTTTTTCTAGACCTCTATACACATTTGTC
AGAGCCTAAGGATTAGACTCCTTACCTGGGACAGAAGTTTTAAGTGGGCA
GATGTCCCCCTTGTTAACACCTTAAGGTGTGGGTGCCCTATAAAAAAATT
CCTCGGTTTAGTTCAATGCAGCACTTTTCTCTTATTTGGCTTGTTTGGGC
TCATTTTATTTCCCTACCGGATTTTCTCTCTTTGTTG

Query= MSMg01no370_a04.b1 MSMg01no370_a04.b1 CHROMAT_FILE:
MSMg01no370_a04.b1 PHD_FILE: MSMg01no370_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:54 2005
         (554 letters)



>mm_chr3_142241402_142242355
          Length = 954

 Score = 1017 bits (526), Expect = 0.0
 Identities = 544/550 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttaagcccatttccaattctggatcccatgaagttgcttggtgttgcaggtc 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttaagcccatttccaattatggatcccatgaagttgcttggtgttgcaggtc 264

                                                                       
Query: 65  ttcactcaccctctctctgaatcacctttctccttgaacagatagggtagtgagaatctc 124
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 265 ttcactcaccctctctctgaatcacctttctccttaaacagatagggtagtgagtatctc 324

                                                                       
Query: 125 atgaagcagtcttgtgagctttatcaagacatgtacaaatgtggaggaaaaacaattggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaagcagtcttgtgagctttatcaagacatgtacaaatgtggaggaaaaacaattggt 384

                                                                       
Query: 185 gaatacactgtacactatcattcactaactgaacagaggaactcctgggaagtgccaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaatacactgtacactatcattcactaactgaacagaggaactcctgggaagtgccaaat 444

                                                                       
Query: 245 ggtataggatttagaattttcagggtttttctttttcttaaaactgttatctgtggctta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtataggatttagaattttcagggtttttctttttcttaaaactgttatctgtggctta 504

                                                                       
Query: 305 aattgctttcaaaagtatttttattagattttatttttgcttaaacttacaaaacaatgg 364
           ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 505 aattgctttcaaaggtatttttattagtttttttttttgcttaaacttacaaaacaatgg 564

                                                                       
Query: 365 atttgtgcaacattttcataaatgtatatcattgtatatgctctagcttgctttttcatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttgtgcaacattttcataaatgtatatcattgtatatgctctagcttgctttttcatt 624

                                                                       
Query: 425 gctgtgataaaacactgaacaaaagcaacttggcaaagcaaaggtttatttcatcttata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctgtgataaaacactgaacaaaagcaacttggcaaagcaaaggtttatttcatcttata 684

                                                                       
Query: 485 gactatggtcctgtttttgagggaagtcattgtgtcctgaaagcaaagaccatggaggga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gactatggtcctgtttttgagggaagtcattgtgtcctgaaagcaaagaccatggaggga 744

                     
Query: 545 tgcttcttat 554
           ||||||||||
Sbjct: 745 tgcttcttat 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)