Query= MSMg01no370_d16.b1 MSMg01no370_d16.b1 CHROMAT_FILE:
MSMg01no370_d16.b1 PHD_FILE: MSMg01no370_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:12 2005
(485 letters)
>mm_chr3_65111348_65112232
Length = 885
Score = 905 bits (468), Expect = 0.0
Identities = 476/481 (98%), Gaps = 4/481 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttaattctccaatttcagtttgcatacaaatgtcctatggggttaactccta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaattcatttaattctccaatttcagtttgcatacaaatgtcctatggggttaactccta 506
Query: 65 cttattagcccttgtctttggctgaaactacaaacttcaaaggagcaccaataataacat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttattagcccttgtctttggctgaaactacaaacttcaaaggagcaccaataataacat 446
Query: 125 aacaagtggtctcagtctccaaactgaatgcttgtgttcaagtctgaatctgggtcagcg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacaagtggtctcagtctccaaactgaatgcttgtgttcaagtctgaatctgggtcagcg 386
Query: 185 tagagttttgttgaacttgttaccatcctaagagaatcccttaactaaaaaaacagaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagagttttgttgaacttgttaccatcctaagagaatcccttaactaaaaaaacagaaat 326
Query: 245 ttcaggtgttcctattcagttaaatgagacctaaagaaaagttaccgaaaaagaattctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaggtgttcctattcagttaaatgagacctaaagaaaagttaccgaaaaagaattctg 266
Query: 305 aaatcaaacacacatacactgtgaatcctaagacaatggagattcaaaaaatgtttctcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatcaaacacacatacactgtgaatcctaagacaatggagattcaaaaaatgtttctcc 206
Query: 365 atctctctctctctctctctctctctctctctctctctctctctctctctctctctgnat 424
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 a----tctctctctctctctctctctctctctctctctctctctctctctctctctgcat 150
Query: 425 tgattttgtgaaccattttctgaatctcttcctgaccaattagattaaaaagaaaacaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tgattttgtgaaccattttctgaatctcttcctgaccaattagattaaaaagaaaacaaa 90
Query: 485 t 485
|
Sbjct: 89 t 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no370_d16.g1 MSMg01no370_d16.g1 CHROMAT_FILE:
MSMg01no370_d16.g1 PHD_FILE: MSMg01no370_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:13 2005
(360 letters)
>mm_chr5_38622866_38623625
Length = 760
Score = 650 bits (336), Expect = 0.0
Identities = 354/360 (98%)
Strand = Plus / Plus
Query: 1 cagatccagaccgtagcgatgtatttattgcccttggaattggcagtgaattcagtgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatccagaccgtagcgatgtatttattgcccttggaattggcagtgaattcagtgagg 260
Query: 61 ttttccaaggttcttcccttcccaccttccccatctgtcttgtctgatcctcgtcctgta 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttccaaggtacttcccttcccaccttccccatctgtcttgtctgatcctcgtcctgta 320
Query: 121 gagatgtcccctctctgtctctcagtctcttcctagtatctccttacatgcagctccata 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatgtcccctctctgtctcttggtctcttcctagtatctccttacatgcagctccata 380
Query: 181 gacacctccccatcccttaagccttccatatatccgccatcagaatgccaggccttgact 240
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gacacctccccatcccttaaaccttccatatatacgccatcagaatgccaggccttgact 440
Query: 241 tctctaaacaccacctctcacatggagctcctgtgtcgtgaagctggaaggtcttttgta 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctaaacaccacctctcacacggagctcctgtgtcgtgaagctggaaggtcttttgta 500
Query: 301 aagtgacagttcacactctgtggacccccaccctctcatcctgccagtgggaataagcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgacagttcacactctgtggacccccaccctctcatcctgccagtgggaataagcca 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space: 263601
Effective search space used: 263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
