BAC Information

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BAC

Clone NameMSMg01-370L23
Chromosome3 (Build37)
Map Location 52,158,258 - 52,158,668
singlet/doubletsinglet
Overlap genenone
Upstream geneA630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
Downstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370L23.T7 (MSMg01no370_l23.b1)MSMg01-370L23.TJ (MSMg01no370_l23.g1)
ACCAG477422AG477423
length752776
length of high quality
(start - end)		415 (44 - 458)409 (75 - 483)
definitionCHROMAT_FILE: MSMg01no370_l23.b1 PHD_FILE: MSMg01no370_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:54 2005CHROMAT_FILE: MSMg01no370_l23.g1 PHD_FILE: MSMg01no370_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGAGAGGCAGCAGATGAAGTGGCATTCACTATGCTGAGACTGCTAAT
AGCAATATGAGAGGTGAGAGCTAAGCGAAAGGCTGGCTAAAGCAGAGCTA
TATGGTGAAGGAGGTGGTTAGCTGCAACACAGGCAAAATCCCTTCTAGGC
ATGGCCGCCTCGGTCGTCTGTTCTCTTGTCTTTCTACCTCCCTTGGTGGA
ATGAAGCGAACTACAGCTCCACACTTGTCAAATTAGTCCTGGTTTCTTGT
TCTGCGTTTAATTTGTAGGGATGTTGGCAGACACAGACTGGTTTCCCAAA
GACAAATGCCTTTGACTGTGTCCAGGGTCAAGTGCACTGGCAGTTGCTCA
GACTCTCTGGGATCTCAGTGGGATGCCTGGGGTTGCCTCTCAACAGTCTT
TGCTACATGTTCAGGGGTAAACGTAGTTACAGCCTTGTATTTAAAAAAGG
AGGTCCTGTACTCATTCACCTCCCCGGGGTACTAATCCGAGATGTTTGGG
ACCTTTTAAGGAAAAAACTTTGACTCCTATGTGGTAAGCCCAACCTTCTT
GGTAACAAAACTTTGGCCCCCGCAAAGGGTAAATCCCGTCTTTAACCCTC
GGACTGTTTCCCCCTTTCTACTAAATCCAATGTATTGGGTAACCTTTTTT
CTCGCTTAATCCTTCCCTTTCTGCAATTCCTTTTCCTTTTTCCCCCCCCC
CC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGACAATAAATGTACAACATACCC
AAACTTATGGGACACCATGGGAGCAGTGCTACGAGGAACATTTATAGTAC
CAAAGGCATTCACAAATAAATTAATGAGATCTCATACTAGCTACTAAACA
TCATGCCTGAAGGCTCTAGAACAAAAAAAAAGCAAACATACCCAAGAGGA
AAAGACAGCAGGAAATAATCAAATTCAGGGCTGAAATCAATAAATTGAAA
CAAAGAGAACTATACAAAGAATCAACTAAACCAAGAGCTGGTTCTTTGAG
AAAGTCAACAAGATAGACAAACCCTTAGCCACACTAACTAAAAAGTAGAG
GAAGAATATCCAAATTAACAAAATCAGAAATGAAAAGCAGGCATAACAAC
AAACACTGAGGAAGTCTAAAGGATCATTTGGTCTTACTTCAAAAGCCTAT
ACTACACAAAATTGGAAAATCTAAAAGAAATGGAAATTTTTCTTGATAGA
CATCACCTTACCAAAGTAAAACCAGCTCAGATTTTAAAAGGGCCATTACC
TTTTAATTAAACCACCATCCCCCAAAAAAAAAAAAAGGCCTTATAAATCC
CCCCCCAAAAAAAAACCCGGGCGAAAAATTTTAAGGCGAAATCTTCCCGC
TTTCAAAAGGAACAAAAACAAAACCCTCCCATATTTCCCCCCTAAAAAAA
AAAAAAAATTGTTTTTTTTTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_l23.b1 MSMg01no370_l23.b1 CHROMAT_FILE:
MSMg01no370_l23.b1 PHD_FILE: MSMg01no370_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:54 2005
         (415 letters)



>mm_chr3_52158054_52158868
          Length = 815

 Score =  733 bits (379), Expect = 0.0
 Identities = 403/411 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagaggcagcagatgaagtggcattcactatgctgagactgctaatagcaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaattctgagaggcagcagatgaagtggcattcactatgctgagactgctaatagcaata 556

                                                                       
Query: 65  tgagaggtgagagctaagcgaaaggctggctaaagcagagctatatggtgaaggaggtgg 124
           ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 555 tgagaggcgagagctaagtgaaaggctggctaaagcaaagctatatggtgaaggaggtgg 496

                                                                       
Query: 125 ttagctgcaacacaggcaaaatcccttctaggcatggccgcctcggtcgtctgttctctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttagctgcaacacaggcaaaatcccttctaggcatggccgcctcggtcgtctgttctctt 436

                                                                       
Query: 185 gtctttctacctcccttggtggaatgaagcgaactacagctccacacttgtcaaattagt 244
           |||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 435 gtctttctacttcccttggtggaatgaagtgagctacagctccagacttgtcaaattagt 376

                                                                       
Query: 245 cctggtttcttgttctgcgtttaatttgtagggatgttggcagacacagactggtttccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cctggtttcttgttctgcgtttaatttgtagggatgttggcagacacagactggtttccc 316

                                                                       
Query: 305 aaagacaaatgcctttgactgtgtccagggtcaagtgcactggcagttgctcagactctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaagacaaatgcctttgactgtgtccagggtcaagtgcactggcagttgctcagactctc 256

                                                              
Query: 365 tgggatctcagtgggatgcctggggttgcctctcaacagtctttgctacat 415
           ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgggatctcggtgggatgcctggggttgcctctcaacagtctttgctacat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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