BAC Information

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BAC

Clone NameMSMg01-371C07
Chromosome3 (Build37)
Map Location 133,083,537 - 133,083,895
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2
Downstream geneE130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371C07.T7 (MSMg01no371_c07.b1)MSMg01-371C07.TJ (MSMg01no371_c07.g1)
ACCAG477723AG477724
length761768
length of high quality
(start - end)		528 (76 - 603)528 (45 - 572)
definitionCHROMAT_FILE: MSMg01no371_c07.b1 PHD_FILE: MSMg01no371_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:26 2005CHROMAT_FILE: MSMg01no371_c07.g1 PHD_FILE: MSMg01no371_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGGTTGAATTACTTTGTTAACTG
CACTTAAATCCATTATCATCCTCCATTTTCCAGATTTCTTTTTAAAACAA
ACACAGAGGAATTCCATGGGCTGGCGACTCTTGTATATGTTGAGCCCCCA
GCTGCTCTTTTACTAGTTGTTCAAGTACGTGAAATTTTTCTTTTGTTATG
GGCTACTGTTCTTCCCATACAGTCTGTTTGGTAACCATTTTCAGGGCAAG
ACTGTTGGTACATCAGCCCTTTGGAAAGTCAGTCCCTGTGATGTCCTGTT
TTGGGACCAGGGGCACAGCTTGTGAGTTTTCTTGATCACCTGTATCAATA
CTTTTCCTAGGAGCATCTATCATGTCACACTTAAATTCCTCACTAGAGAT
TAGATACATCTTGGAAAATGTAAAAGAAATCTTATAACAGGTATTAAACT
GTGTTCACCTATTTCAAATAACAGACCTACCAATCCACTGCAGTTTAGTA
GAGTGGATCTTTCTCTGTGCATCCTATCTTCCTCAGAGATATATATTTCA
ATTCTTTAATAATTTTATAATATAACAATGTATTTGATCATGTTTACCTC
CAATTCTCCCTCCCTCTCCCCCAGACCCTCAGTTTATACTCCTTAAACCA
TCATCATCTTCTTCTTTTTTAAAAAAAAACCAGTTTCCCAAGGGCCACTG
GAGTCCATCAN

CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCTCATATCTCAACATGTAAAAGCAATCTACAGAAAACCAGTA
GCCAACATCAAAGTAAATGGTGAGAACCTGGAAGCAATCCCACTAAAATC
GGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTCTTCAACATAGTAA
TTGAAATCCTGGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATA
CAATTTGGAAAAGATGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGA
TAAAAAACTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCA
ATGACCTTTCTCTACACAAAGAATAAACAGGCTAAGAAAGAAATTAGGGA
AACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGTGTGA
CTCTATCTAAGGAAGTGAAATATCTGTATGAAAAGAACTTCAAGTCTCTG
AAGAAAGAAATTATAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTC
ATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGGCAAAGCAAT
CTACAGATTCATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGA
ATAAAAAAGAGCAACTGCAAATTCTCCTGAATAAACAAAACCTAGGAAAG
CGAAACTTCTCTCCAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_c07.b1 MSMg01no371_c07.b1 CHROMAT_FILE:
MSMg01no371_c07.b1 PHD_FILE: MSMg01no371_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:26 2005
         (528 letters)



>mm_chr3_133082968_133083895
          Length = 928

 Score =  687 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Minus

                                                                       
Query: 170 gttatgggctactgttcttcccatacagtctgtttggtaaccattttcagggcaagactg 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gttatgggctactgttcttcccatacagtctgtttggtaaccattttcagggcaagactg 869

                                                                       
Query: 230 ttggtacatcagccctttggaaagtcagtccctgtgatgtcctgttttgggaccaggggc 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ttggtacatcagccctttggaaagtcagtccctgtgatgtcctgttttgggaccaggggc 809

                                                                       
Query: 290 acagcttgtgagttttcttgatcacctgtatcaatacttttcctaggagcatctatcatg 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 acagcttgtgagttttcttgatcacctgtatcaatacttttcctaggagcatctatcatg 749

                                                                       
Query: 350 tcacacttaaattcctcactagagattagatacatcttggaaaatgtaaaagaaatctta 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tcacacttaaattcctcactagagattagatacatcttggaaaatgtaaaagaaatctta 689

                                                                       
Query: 410 taacaggtattaaactgtgttcacctatttcaaataacagacctaccaatccactgcagt 469
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 taacaggtattaaactttgttcacctatttcaaataacagacctaccaatccactgcagt 629

                                                                      
Query: 470 ttagtagagtggatctttctctgtgcatcctatcttcctcagagatatatatttcaatt 528
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttagtagagtggatctttctctgtgcatcctatcttcctcagagatatatatttcaatt 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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