Query= MSMg01no371_i08.b1 MSMg01no371_i08.b1 CHROMAT_FILE:
MSMg01no371_i08.b1 PHD_FILE: MSMg01no371_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:59 2005
(506 letters)
>mm_chr3_39973541_39974449
Length = 909
Score = 915 bits (473), Expect = 0.0
Identities = 499/509 (98%), Gaps = 3/509 (0%)
Strand = Plus / Minus
Query: 1 actcttaaaaattctcagggtcctaaactcaaagaagtcaagtagatactgagttctcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 actcttaaaaattctcagggtcctaaactcaaagaagtcaagtagatactgagttctcta 620
Query: 61 ttacaaagtgcacaatgaagtcctgttgggcatgctgtcccaaataagattcagttagcc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 619 ttacaaagtgcacaatgaagtcctgttgggcatgctgtgccaaataagattcagttagcc 560
Query: 121 tgacacaca---tttcctttcacagatgtctttgaagaagagaaaactcaactgtgagac 177
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 559 tgacacacaaggtttcctttcacagatgtctttgaagaagagaaaactcaactgtgggac 500
Query: 178 aggaaatcatcagttaaggtaaaggtatagatggagctaaggtggctcttcttgctgaga 237
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 499 aggaaatcatcagttaaggtaaaggtatagatggagctaaggtggttcttcttgctgaga 440
Query: 238 gagatagactattttttccctcttttaaagatctagatacattataatctgttcagagga 297
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 439 gagatagactattttttccctcttttaaagatttagatacattataatctgttcagagga 380
Query: 298 cacattaaggattgtctttagattgggacaggcccagttgacactcacttcctacacagg 357
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacattaagtattgtctttagattgggacaggcccagttgacactcacttcctacacagg 320
Query: 358 ctgttggtgtcagcacactaaggtcttcgtgtttcctgatatagtcaagacttttgcatt 417
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 319 ctgttggtgtcagcacactaaggtctttgtgtttcctgatatagtcaagacttttgcatt 260
Query: 418 tattacaagaaactatccagacaggttttgggtccctgacacacagagaaaattgttgca 477
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tattacaagaaactatccacacaggttttgggtccctgacacacagagaaaattgttgca 200
Query: 478 taaaataaaatttttatttaaggaccaaa 506
|||||||||||||||||||||||||||||
Sbjct: 199 taaaataaaatttttatttaaggaccaaa 171
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 909
Length adjustment: 10
Effective length of query: 496
Effective length of database: 899
Effective search space: 445904
Effective search space used: 445904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_i08.g1 MSMg01no371_i08.g1 CHROMAT_FILE:
MSMg01no371_i08.g1 PHD_FILE: MSMg01no371_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:00 2005
(567 letters)
>mm_chr3_39810333_39811300
Length = 968
Score = 1036 bits (536), Expect = 0.0
Identities = 551/556 (99%), Gaps = 2/556 (0%)
Strand = Plus / Plus
Query: 14 gaattctgtatctcctttcc-tactatgatgtcactggtgacacaaagttctcagcttct 72
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctgtatctccttgcaatactatgatgtcactggtgacacaaagttctcagcttct 272
Query: 73 ttaaaaagaagttaccccggagaaacaacctgagaccatggtcatctctgagcatctaac 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttaaaaagaagttaccccggagaaacaacctgagaccatggtcatctctgagcatctaac 332
Query: 133 tatgtagggttacagtattctagcatggaagaagaatgttgggtttctgttcctacttag 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tatgtagggttacagtattctagcatggaagaagaatgttgggtttctgttcctacttag 392
Query: 193 aactaacacaatgattaaacattgatagtactgggctctgcattctatctgtaaaatgtt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aactaacacaatgattaaacattgatagtactgggctctgcattctatctgtaaaatgtt 452
Query: 253 actctacctcatcctaattttaaaaaatgaataaataaaagtttaaaatatgtagtaaat 312
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 actctacctcgtcctaattttaaaaaatgaataaataaaagtttaaaatatgtagtaaat 512
Query: 313 aagctctgaaacatagcatttcttgtttaaaacaaggaatttaaatcaaattataaacta 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aagctctgaaacatagcatttcttgtttaaaacaaggaatttaaatcaaattataaacta 572
Query: 373 attttcaataacaaataattaaagtattgatcaacccagtttggggttccaagtataaaa 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 attttcaataacaaataattaaagtattgatcaacccagtttggggttccaagtataaaa 632
Query: 433 tctagcaaaataaaaagaccactttaaagtgttttgttttgtttgttt-ttttttttaat 491
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 633 tctagcaaaataaaaagaccactttaaagtgttttgttttgtttgtttgttttttttaat 692
Query: 492 tattgttaacatagggtttcagttcagggcaggctgagtctccatcttgtcatcctcctg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tattgttaacatagggtttcagttcagggcaggctgagtctccatcttgtcatcctcctg 752
Query: 552 cctctatctccctagt 567
||||||||||||||||
Sbjct: 753 cctctatctccctagt 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
