BAC Information

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BAC

Clone NameMSMg01-371K10
Chromosome3 (Build37)
Map Location 158,502,860 - 158,503,331
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7, LOC100041008
Downstream geneLOC668905, LOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371K10.T7 (MSMg01no371_k10.b1)MSMg01-371K10.TJ (MSMg01no371_k10.g1)
ACCAG478105AG478106
length781770
length of high quality
(start - end)		472 (72 - 543)545 (41 - 585)
definitionCHROMAT_FILE: MSMg01no371_k10.b1 PHD_FILE: MSMg01no371_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:10 2005CHROMAT_FILE: MSMg01no371_k10.g1 PHD_FILE: MSMg01no371_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGATGGTCTTGGAAGCTACTGCTTGTCTT
CCCTGACCATTTATGGATGAGTCTTCCAAAAATGAGCTAGCAGAATCCTC
CTCTGAGAGATAGTATTGTTACACTTTCAGAGTCTAGAGCCTACATACCT
ACTCCTCAGTGAACCTCAGTACCCAAGTCTGTGGGTTTCAATCAATTCCT
TCTTCATCTGTCTAAAGTGGTTTCTGAATCCTAGTTTCAAGCCTGAATGA
TCAACCTGATCAAACCTCAGCTTCCTCTCTTGGAAATTGGGGCAAATAGG
TGTTTGTTTAATGGGAGAACTAAATCAGATGGCTTCTGAAGAATGTTTAA
CTCAGCATGCAGCAGAGCAAGGCCCTAATATATATTTAAAGGAGTTATTT
TTGTATTAGCCTGTTCTCAGACAATCATGTAGCTGAGTTAAATTCAGCCA
CAAGTTGTCAGTCGTGGCCAACCAAGCTCTTTCAGCCCTTGTTTGGGTTA
CATGCATAAGTGGTGGCTGCTCTACTGTTTTACAAAGCCCTAAAGTCTTC
TTATGTCAGTTCCAACAGTCAAAAATGGGTCTATGCTCAGTTAAACTGGG
CTAAAATCCAAGGGATCCTATTTTTTTTATTTCCCCACAAGGAAAGAATG
GTAATGGGAAATTCCTTACCTTCCGATTGGGGCACAAACAAAAGTTGTAT
AAAAACGGGTTGTTTTTTATAAAAGGTTTGG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGGATCCGCGGAATT
CACTCTTCTAAGTATTCGGATTCTTCTACGGCAAAGCTTTATTGCTTCAT
CTGAAGGAAGACCCTGAACAAGGAAAATGGTGCAGCTTATATACCCCTCC
ATGTGAGGTGTCAGCTCCTGATTAGCTGCTCACTCATCACCCCACTACTA
TGCCCTGGGATGGGCAGTGACTTGGCATGAATTTACTCTTGCACCTGTGC
ACATTACTTGTTTACCAGTTAGGCACAGCAGAGGCTCATGATGGCGATTG
CTCACGGCTCTCCACACCAACCCACTCCCATTTCCTGACCCTTGCATTCC
CCTGTACTGGGTCATATAAAGTTTGCAAGACCAACGGGCCTCTCTTCCCA
ATGATGGCCGACTAGGCCGTCTTCTGTTACATATGCAGCTAGAGACACGA
GCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGC
AGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTTAAATATACTTT
AACATTTAATATGTATGAATAGAGTTTATATGTTCACAAGAGCACAACAC
TAGAGGCCTTAAGCAATACGGGAAATTTAGTTAAGATACCTGAGGTTGCA
GTTCACAGGTGACATCCTCTTTAGGCTGAAAGGACTCCTTTGGAGTATAC
CACTGGAAATACTAACCTTTATATATTATTGAGAGATTTAAAAAAAAATA
CCTAATCCCCAAAGGTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_k10.b1 MSMg01no371_k10.b1 CHROMAT_FILE:
MSMg01no371_k10.b1 PHD_FILE: MSMg01no371_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:10 2005
         (472 letters)



>mm_chr3_158502660_158503531
          Length = 872

 Score =  884 bits (457), Expect = 0.0
 Identities = 469/473 (99%), Gaps = 2/473 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatggtcttggaagctactgcttgtcttccctgaccatttatggatgagtcttccaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agatggtcttggaagctactgcttgtcttccctgaccatttatggatgagtcttccaaaa 613

                                                                       
Query: 61  atgagctagcagaatcctcctctgagagatagtattgttacactttcagagtctagagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atgagctagcagaatcctcctctgagagatagtattgttacactttcagagtctagagcc 553

                                                                       
Query: 121 tacatacctactcctcagtgaac-ctcagtacccaagtctgtgggtttcaatcaattcct 179
           |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct: 552 tacatacctactcctcagtg-actctcagtacccaagtctgtgggtttaaatcaattcct 494

                                                                       
Query: 180 tcttcatctgtctaaagtggtttctgaatcctagtttcaagcctgaatgatcaacctgat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcttcatctgtctaaagtggtttctgaatcctagtttcaagcctgaatgatcaacctgat 434

                                                                       
Query: 240 caaacctcagcttcctctcttggaaattggggcaaataggtgtttgtttaatgggagaac 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 caaacctcagcttcctcacttggaaattggggcaaataggtgtttgtttaatgggagaac 374

                                                                       
Query: 300 taaatcagatggcttctgaagaatgtttaactcagcatgcagcagagcaaggccctaata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 taaatcagatggcttctgaagaatgtttaactcagcatgcagcagagcaaggccctaata 314

                                                                       
Query: 360 tatatttaaaggagttatttttgtattagcctgttctcagacaatcatgtagctgagtta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tatatttaaaggagttatttttgtattagcctgttctcagacaatcatgtagctgagtta 254

                                                                
Query: 420 aattcagccacaagttgtcagtcgtggccaaccaagctctttcagcccttgtt 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aattcagccacaagttgtcagtcgtggccaaccaagctctttcagcccttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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