BAC Information

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BAC

Clone NameMSMg01-372E06
Chromosome3 (Build37)
Map Location 79,972,415 - 79,972,911
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372E06.T7 (MSMg01no372_e06.b1)MSMg01-372E06.TJ (MSMg01no372_e06.g1)
ACCAG478569AG478570
length750755
length of high quality
(start - end)
592 (41 - 632)497 (76 - 572)
definitionCHROMAT_FILE: MSMg01no372_e06.b1 PHD_FILE: MSMg01no372_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:58 2005CHROMAT_FILE: MSMg01no372_e06.g1 PHD_FILE: MSMg01no372_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGAAGCTACTGACCAAAAAATCAAACAACCCAATTAAAAAATGGGGTAT
AGAACTAAACCAAGATTTCATAACCGAGGAATATAAAATGTCTGAGAATC
ACCAAAGAAATGTTCAAAGTCCTTAGTGATCATAGAAATGCAAATCAAAA
CAACGCTGAGATTCCACCTTACACCAGTCAGAATGGTTAAGATCAAAACC
TCAGGTGGCATCACATATTGGAGAGGATGTGGAGAAAGAGGAACACTCCT
CAATTGCTGGTAGGATTGCAAACTGATACAACCACTCTGGAAATCAATCT
GGAGGTTCCTTAGAAATGTGGAAATAGATCTACCTGAAGACCAGGTATAC
CACTCTCTGGAATATATCCAAAAGATGCCCCACCATGCCTCAGGGGCACA
TGTTCCACTATATTCATACTGGCCTTATTTGTGATAGACAGAAGCTGGAA
ACAACCCAAATGTCCCATGACAGAAGATTAGATACAGAANATGTAGTTCA
TTTACACAATGGAATACTACTCAACTATTAAGAACGAGGACATTCTGACT
TTTGTAGGCAAATGGATAGAACTAGAAAATATCATCCTGAGTGAGATAAC
TCAGACCCAAAAAGACATGCATGGGACATATTCCCTAATAAGTAGATATT
AGCATTTTAAAAATGCAGAATACCCCAGATTCCGTCCACAAACTTCAAAA

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTCAGAAAGCAGGAGCTGATGCA
AAGGCCATTGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGGATTTCTCA
GCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACC
ACAAGGGGCCTTTCCCTATTGATCACTAACTGAGGAAATGCCTTACAGCT
GGATCTCATGGAGGTATTTCCTCAACTGAAGCGCCTTTCTCTGTGATAAC
TCCAGCTGTGTCAAGTTGACACAAAACTACCCAGTACAAGTACACACCAA
CATACACTATCATTTTACAAGACCAGATGGTGACCTCTTCTATTACTGCA
GGTGGTGTACCTAAAACACACTAAGAGAAGAATAGGAGAGGCACTGGAGA
AATGCCTCAGCAGGTAAGAGCACTAGCCTCTCTTGCAGAGGACCTGGAGT
TGATTTCTAGTCTTAACATGGTGGCTCACAATTGTTTGCAACTACAGTTT
AATTGAATCTAACACTTCTGACCTCTGCAGGCATGAGGCAAACACATTGT
GCACATAGATATCAGCAAGCAAAACACTCATAGTCATCAACTAAAATAAA
TAATTCTTAGACACTACATAAAAAGAAAAAATACTGGGGGGTACAGCTGG
GTTTGATAAAAGGGGGAGCGCTATAAAAGAAAATGCGGTCTTCTATCAGG
AAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_e06.g1 MSMg01no372_e06.g1 CHROMAT_FILE:
MSMg01no372_e06.g1 PHD_FILE: MSMg01no372_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:58 2005
         (497 letters)



>mm_chr3_79972215_79973111
          Length = 897

 Score =  814 bits (421), Expect = 0.0
 Identities = 478/497 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcagaaagcaggagctgatgcaaaggccattgagggatgttctttactggcttgctt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcagaaagcaggagctgatgcagaggccattgagggatgttctttactggcttgctt 260

                                                                       
Query: 61  cccctggatttctcagcctgctctcttatagaacccaagactaccagcccagagatggtc 120
           ||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccctggcttgctcagtctgctttcttatagaacccaagactaccagcccagagatggtc 320

                                                                       
Query: 121 ccaccacaaggggcctttccctattgatcactaactgaggaaatgccttacagctggatc 180
           |||||||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||| 
Sbjct: 321 ccaccacaaggggcctttccctcttgatcactaattgagtaaatgccttacagttggata 380

                                                                       
Query: 181 tcatggaggtatttcctcaactgaagcgcctttctctgtgataactccagctgtgtcaag 240
           ||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 381 tcatggaggcattttctcaactgaagctcctttctctgtgataactccaactgtgtcaag 440

                                                                       
Query: 241 ttgacacaaaactacccagtacaagtacacaccaacatacactatcattttacaagacca 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgacacaaaactacccaatacaagtacacaccaacatacactatcattttacaagacca 500

                                                                       
Query: 301 gatggtgacctcttctattactgcaggtggtgtacctaaaacacactaagagaagaatag 360
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 gatggtgaccttttctattactgcaggtgctgtacctaaaacacactaagagaagaatag 560

                                                                       
Query: 361 gagaggcactggagaaatgcctcagcaggtaagagcactagcctctcttgcagaggacct 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gagaggcactggagaaatgcctcagcaggtaagaacactagcctctcttgcagaggacct 620

                                                                       
Query: 421 ggagttgatttctagtcttaacatggtggctcacaattgtttgcaactacagtttaattg 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 ggagttgatttctagtcttaacatggtggctcacaattgtttgtaactacagtttaattg 680

                            
Query: 481 aatctaacacttctgac 497
           |||||||||||||||||
Sbjct: 681 aatctaacacttctgac 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)