Query= MSMg01no372_i08.b1 MSMg01no372_i08.b1 CHROMAT_FILE:
MSMg01no372_i08.b1 PHD_FILE: MSMg01no372_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:17 2005
(519 letters)
>mm_chr3_100558695_100559613
Length = 919
Score = 948 bits (490), Expect = 0.0
Identities = 511/518 (98%)
Strand = Plus / Plus
Query: 1 ccagttccctacctagagcaccagacaatcatagtggctgtggacaatctcaagtggccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagttccctacctagagcaccagacaatcatagtggctgtggacaatctcaagtggccc 260
Query: 61 catatcccacacctgggattaaaacaaaaacatatgtatataatgtaacagggtttttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatcccacacctgggattaaaacaaaaacatatgtatataatgtaacagggtttttaa 320
Query: 121 agaaaccaaaatcctcactacatttacctaaagcaaatttctattgtgcacactttaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaccaaaatcctcactacatttacctaaagcaaatttctattgtgcacactttaaaa 380
Query: 181 gaaaatttagtagaactttggttcatatccagagcctcatacagtctagcactgattgat 240
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaatttagtagaactttggctcaaatccagagcctcatacagtctagcactgattgat 440
Query: 241 agatcccatcatccctgatctatacatttgggcatctttcttttttcacttgacatctgt 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatcccaccagccctgatctatacatttgggcatctttcttttttcacttgacatctgt 500
Query: 301 ttatgaagtgctggagattgaaacaagggccctacttctgagcaacacttcccgtcttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatgaagtgctggagattgaaacaagggccctacttctgagcaacacttcccgtcttta 560
Query: 361 cttaataacatttgaagcattttcacatccacatacattacttaaccaccttctcttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttaataacatttgaagcattttcacatccacatacattacttaaccaccttctcttttt 620
Query: 421 tttccccacttttaacattttttaaaaatttcatttgtttggtttttttagataaggtct 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcccccacttttaacattttttaaaaatttcatttgtttggtttttttagataaggtct 680
Query: 481 cactttgtacccccagctgccctggaactccctatgta 518
||||||||| |||| |||||||||||||||||||||||
Sbjct: 681 cactttgtatccccggctgccctggaactccctatgta 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_i08.g1 MSMg01no372_i08.g1 CHROMAT_FILE:
MSMg01no372_i08.g1 PHD_FILE: MSMg01no372_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:17 2005
(492 letters)
>mm_chr3_100729602_100730493
Length = 892
Score = 721 bits (373), Expect = 0.0
Identities = 428/455 (94%), Gaps = 18/455 (3%)
Strand = Plus / Minus
Query: 48 agaaggaaacttcccaaaggaactgaacactggtctaaaggagccatttctaggtggacc 107
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 892 agaaggaaacttcccaaaggaaccgaacactggtctaaaggagccatttctaggtggacc 833
Query: 108 tggtgatgcacatctttaaacctggcagaggcaagtgcatctctctaagtttaaggccaa 167
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 832 tggtgatgcacatctttaaacccggcagaggcaagtgcatctctctaagtttaaggccaa 773
Query: 168 tctgttccacatagttccaggtcagccagagct---ata--cagtgagaccctgtcttaa 222
||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 772 tctgttccacatagttccaggtcagccagagctgtgttaagcagtgagaccctgtctt-- 715
Query: 223 caacaaaagcaaaggaga-----tttttccgaacaaaccccatcaacctaccaaatcctt 277
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 714 -aacaaaagcaaaggagacaaac-----ccgaacaaaccccatcaacctaccaaatcctt 661
Query: 278 tcaactaccaatggcatagagtttgtgtgaaccaaaatgataaggaggaaaggaaggcat 337
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 660 tcaactaccaatggcatagagtttgtgtgaaccaaaatggtaaggaggaaaggaaggtgt 601
Query: 338 gactgccttcccactcctctgtaacccaccacacagcagccaagcacgaggagctgcggt 397
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 600 gactgccttcccactcctctgtaacccaccacacagcagccaagcaccaggagctgcggt 541
Query: 398 gtgcgcctctgagcaggtagattctgccttgctctagtcagtgccgttatctcctgtggg 457
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtgagcctctgagcaggtagattctgccttgctctagtcagtgccgttatctcctgtggg 481
Query: 458 cacagccaggttctaacttcccccaagcaaagcct 492
||||||||||||||||||||||| |||||||||||
Sbjct: 480 cacagccaggttctaacttccccaaagcaaagcct 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
