ACTCCTATTTCGAGAGGATCCGCGGAATTCTTGGACTTTCGATGTATCTG
GAGGATATCATCCTTAGTGAGGTAACCAAATCACTAAAGAAGTCATTAGA
TATGCACTCACTGGTAGGTGGATATTAGCCCAGAAATATAGAACCCAAGA
TACAATATGCAAAACAAGAGAAAATCAAGTAGAGGGAAAACCAACGGGTG
GATACTTCATTCCTCCTTTGAATAGGGAACAAAATACCCATGGAAGGAGT
TGCAGAGACAAAGTTTGGAGCTAGGACAAAAGGATGGACTGTCCTGATAC
TACCTCACCCTGGGATCCATCCCATAATCATCCAGCAAACCGAGACACTA
TTGCATATGCCAGGAAGATTTTGCTGAAGGGACCCTCGTATAGCTGTCAC
ATATGAGGCTATGCCAGTGTCTGGCAAATACAGAAGTGGATGCTCACAGT
CATCTATAAGATGGAACACCTGGCCCCCAATGGAGAAGCTGGAGAAAGCA
CCCAAGGAGCTGAAGCAATCTGCAACCCTATAGATGAAACAACAATGTGA
ACTAACCAGTANGCCCACAGCTCGAGTCTAGCAGCCCCTTTTAAATTGAA
CTGCTATCTTTTCTGTTGCTAGGAAACTAGGGAAGAGTTTAGCCTGAAGG
CCAAAAGCTTAGGAAGTTGCCTATGTGACTTCTCACCATGCTTCTCTTTG
GGGGGGCTGGGGGGGTGTGGAAAAACTTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAACAGGAGACAGGCTTAATGATATTGATTCAAAAGATGCAT
GTTCCCAGGATCATGTTGAAGAAATAATGTTATCTCAAATCTACAGTTTC
TATTAAAATAAAATTGTTCTGCTTAAAAAGAAGCAATTTAAGATTAGTGT
CCAAAGAACTAGAGATATAAAACTAACTGAATACTTTTCTGGCCCCAATT
ATTTTATACTTTTAGTAGAAAAGTATTAGCATGGCACAACTACAAGACAT
AAGGTTTGCAGGTTTATTTAGTGACTGGTGTATCTATTAGGACTAAGGAC
AAGTGAAGCTGTCAGGACATAATGAAGGTAAATGATTAGTTAGCACCAAG
GCTGAACTCTTCTTCAATGCAATAAGAGTTAATTAAAGTTTACCATTAAA
CATCAACCAAAGCAGAATGTTGATCAGGTTTCAGCATTAAGTGCAAACAG
ACAATAGTTGGCAGCAATTAGTGAGGCTATCAAATGACATGCAATGATAA
TTATACATTTAAAACAGCTAAAGAGCTAGGAGAGAAAGTAATCAGCCTTT
GTGAAGACAAATAGTCAGAGGGCAGGAAACAGGTATCCGATTTTCTCACT
TTAGCACTGTAAATCAATAGAATGAAACAAGAAAGGGTTGTCTAGATACT
TAACTGAAAGAGAACAGCTAGGTGTATCCCAAAGGAG

Query= MSMg01no373_n06.g1 MSMg01no373_n06.g1 CHROMAT_FILE:
MSMg01no373_n06.g1 PHD_FILE: MSMg01no373_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:52 2005
         (577 letters)



>mm_chr3_5233248_5234224
          Length = 977

 Score = 1100 bits (569), Expect = 0.0
 Identities = 575/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacaggagacaggcttaatgatattgattcaaaagatgcatgttcccaggatcatgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 caacaggagacaggcttaatgatattgattcaaaagatgcatgttcccaggatcatgttg 718

                                                                       
Query: 61  aagaaataatgttatctcaaatctacagtttctattaaaataaaattgttctgcttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aagaaataatgttatctcaaatctacagtttctattaaaataaaattgttctgcttaaaa 658

                                                                       
Query: 121 agaagcaatttaagattagtgtccaaagaactagagatataaaactaactgaatactttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agaagcaatttaagattagtgtccaaagaactagagatataaaactaactgaatactttt 598

                                                                       
Query: 181 ctggccccaattattttatacttttagtagaaaagtattagcatggcacaactacaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctggccccaattattttatacttttagtagaaaagtattagcatggcacaactacaagac 538

                                                                       
Query: 241 ataaggtttgcaggtttatttagtgactggtgtatctattaggactaaggacaagtgaag 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 537 ataaggtttgcaggtttatttagtgactggtgtatctattagggctaaggacaagtgaag 478

                                                                       
Query: 301 ctgtcaggacataatgaaggtaaatgattagttagcaccaaggctgaactcttcttcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctgtcaggacataatgaaggtaaatgattagttagcaccaaggctgaactcttcttcaat 418

                                                                       
Query: 361 gcaataagagttaattaaagtttaccattaaacatcaaccaaagcagaatgttgatcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gcaataagagttaattaaagtttaccattaaacatcaaccaaagcagaatgttgatcagg 358

                                                                       
Query: 421 tttcagcattaagtgcaaacagacaatagttggcagcaattagtgaggctatcaaatgac 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 357 tttcagcattaagtgcaaacagacaatagttggtagcaattagtgaggctatcaaatgac 298

                                                                       
Query: 481 atgcaatgataattatacatttaaaacagctaaagagctaggagagaaagtaatcagcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atgcaatgataattatacatttaaaacagctaaagagctaggagagaaagtaatcagcct 238

                                                
Query: 541 ttgtgaagacaaatagtcagagggcaggaaacaggta 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttgtgaagacaaatagtcagagggcaggaaacaggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)