BAC Information

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BAC

Clone NameMSMg01-374C23
Chromosome3 (Build37)
Map Location 5,773,544 - 5,773,888
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620283, Zfhx4, Pxmp3, EG620382, EG667759
Downstream geneLOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374C23.T7 (MSMg01no374_c23.b1)MSMg01-374C23.TJ (MSMg01no374_c23.g1)
ACCAG480040AG480041
length783814
length of high quality
(start - end)
345 (172 - 516)154 (56 - 209)
definitionCHROMAT_FILE: MSMg01no374_c23.b1 PHD_FILE: MSMg01no374_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:20 2005CHROMAT_FILE: MSMg01no374_c23.g1 PHD_FILE: MSMg01no374_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAAGGGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGGATTCTTTCATAGTTTGAATACCAAGAACTTCATACTGAACGAT
AGAAGTATGATGATCCCCAAAGCAGAAGATCCACCTGGGAAACAGCCTAA
GTCCATCAGCTGTAACATATGGTTACTAACAGGGATACAGATTCACCAAC
AAACTTGGAGCCCAGAATTACTCAGAGAAGTTTATCCCAAGCACATAAGA
TTTGTAGATTATGAAAATGCATATTCTGATTATTTTTTAAAATCACTCAG
AAAAAGAGCTACCTTCCCTAGGCTGAATTTTTACCAAGAGAAAAGCAAGA
AAAGAATAAAATGTATTACTGGCAAATAGAAATTTATACAGGAGGATGGA
ATTAATCACAGCACCGAAATTGAAATAGCCATTTACTTAAAGCTGTCAAT
CAAATGTTACTATCAGGTGTTATCTGGAAATAGAGAGGAAACAGATCTTC
AATTGATGCTCTTCAGAAATAATGAGCTTGTTTCTCAACCCCCAACAACA
GAGAAAGGGCATTGACAAGTATCATTGAGGGTCCCATTTCATTGGTCAAA
GCTGGGAAAAATGGGGAAGTTAGGCCGATAGTATGGAAAATTAAAAACGA
ATGGGGGCCATTTTTTTCCAGGAACTTTGGTTAAAAAAAGTTTTCTTTTC
TGTGGCCTTGAAGATTCTTAAAAAAAAGGGACCCATTCCTGGAAACTTAA
TTATTTGGGGTGGGCCCCCCCAAAAAAAAAAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTGATCTTTCCAAGACTTTTACAATGAAGGGGTATTGAATTTTGT
CAATGCATTCTCAGCCTCTCATGAGATGATCATATGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTCTGNGNGNTTTAACTTGANTTTGTT
TATGTGGTGGGTTATTTTGATAGATTTAGATATAATGTAATTTNATTGTA
TACGTGTTATGTATTTTATTCTTTTATGATGGATGATTGTTTTGATGTAT
TTTTTTTTTTTTTTTGATAGAATTTTAGTGAGTTTTTTTGTAAAAATCTT
TTTAATGTAAAGTGGTTTGAATTATCTTTTTTTTTTGTTGTATTCTTTTC
CCCCCCCACCTTTTACATTTCTTTCGTGCTCTCTTCCCCAATTTTTTCAC
AAATACCTTTTCTTCTCCTTTTTTTTCATTCTGTCTCCCCCTCTTTTTTA
TTCTTTTTCTTCTTTCCACTCCCTCACCTTCTCCTCTTTCTTTTCCCTCT
CTCTTGTCTCTTTGCCTCTTTTTTCTTCTGTCTCACCCTTTTATTCTCCC
TCCTTTTTTCTCTCCTTCACCCCGCCATCTCCTCTTCTTCTCCCCTTTTC
TCCCCCTATCCTCGCTTTATTTCTCTCTTCTCGCATACTTTCTCCTTTCA
ACCCCCGCCCACTCTTCTCGCCTATCTCCCTTTCCCTTTGTTTCTTATTT
CCCCTTCCTTTCTTATCTCCCTTCCTTTATTCTTCCTCTCCCATCCCCCT
CTCTTCGTTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_c23.b1 MSMg01no374_c23.b1 CHROMAT_FILE:
MSMg01no374_c23.b1 PHD_FILE: MSMg01no374_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:20 2005
         (345 letters)



>mm_chr3_5773344_5774088
          Length = 745

 Score =  659 bits (341), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttactaacagggatacagattcaccaacaaacttggagcccagaattactcagagaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gttactaacagggatacagattcaccaacaaacttggagcccagaattactcagagaagt 486

                                                                       
Query: 61  ttatcccaagcacataagatttgtagattatgaaaatgcatattctgattattttttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttatcccaagcacataagatttgtagattatgaaaatgcatattctgattattttttaaa 426

                                                                       
Query: 121 atcactcagaaaaagagctaccttccctaggctgaatttttaccaagagaaaagcaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atcactcagaaaaagagctaccttccctaggctgaatttttaccaagagaaaagcaagaa 366

                                                                       
Query: 181 aagaataaaatgtattactggcaaatagaaatttatacaggaggatggaattaatcacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 365 aagaataaaatgtattactggcaaatagaaatttatacaggaggatggaattaataacag 306

                                                                       
Query: 241 caccgaaattgaaatagccatttacttaaagctgtcaatcaaatgttactatcaggtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 caccgaaattgaaatagccatttacttaaagctgtcaatcaaatgttactatcaggtgtt 246

                                                        
Query: 301 atctggaaatagagaggaaacagatcttcaattgatgctcttcag 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atctggaaatagagaggaaacagatcttcaattgatgctcttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)